Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LDB2O43679 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.65■□□□□ 0.74
LDB2O43679 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
LDB2O43679 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LDB2O43679 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
LDB2O43679 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LDB2O43679 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.64■□□□□ 0.73
LDB2O43679 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.64■□□□□ 0.73
LDB2O43679 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LDB2O43679 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LDB2O43679 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.64■□□□□ 0.73
LDB2O43679 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.64■□□□□ 0.73
LDB2O43679 TSPY20P-201ENST00000450910 630 ntBASIC19.64■□□□□ 0.73
LDB2O43679 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.64■□□□□ 0.73
LDB2O43679 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 MMAB-206ENST00000540016 945 ntTSL 3 BASIC19.64■□□□□ 0.73
LDB2O43679 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.64■□□□□ 0.73
LDB2O43679 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
LDB2O43679 AP006587.1-201ENST00000534129 1502 ntBASIC19.64■□□□□ 0.73
LDB2O43679 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.64■□□□□ 0.73
LDB2O43679 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.64■□□□□ 0.73
LDB2O43679 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LDB2O43679 AC093484.2-201ENST00000580996 2166 ntBASIC19.64■□□□□ 0.73
LDB2O43679 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LDB2O43679 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB2O43679 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB2O43679 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB2O43679 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LDB2O43679 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
LDB2O43679 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
LDB2O43679 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC19.63■□□□□ 0.73
LDB2O43679 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
LDB2O43679 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
LDB2O43679 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.62■□□□□ 0.73
LDB2O43679 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.62■□□□□ 0.73
LDB2O43679 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
LDB2O43679 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB2O43679 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB2O43679 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.62■□□□□ 0.73
LDB2O43679 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.62■□□□□ 0.73
LDB2O43679 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.62■□□□□ 0.73
LDB2O43679 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
LDB2O43679 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.62■□□□□ 0.73
LDB2O43679 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
LDB2O43679 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LDB2O43679 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LDB2O43679 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.61■□□□□ 0.73
LDB2O43679 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.61■□□□□ 0.73
LDB2O43679 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LDB2O43679 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
LDB2O43679 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.61■□□□□ 0.73
LDB2O43679 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 YBX1P10-201ENST00000444752 975 ntBASIC19.61■□□□□ 0.73
LDB2O43679 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.61■□□□□ 0.73
LDB2O43679 AC233263.1-201ENST00000578059 224 ntBASIC19.61■□□□□ 0.73
LDB2O43679 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
LDB2O43679 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
LDB2O43679 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
LDB2O43679 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.61■□□□□ 0.73
LDB2O43679 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms