Protein–RNA interactions for Protein: Q9Y5G1

PCDHGB3, Protocadherin gamma-B3, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3Q9Y5G1 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGB3Q9Y5G1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.45■■□□□ 1.5
PCDHGB3Q9Y5G1 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
PCDHGB3Q9Y5G1 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.45■■□□□ 1.5
PCDHGB3Q9Y5G1 AC010864.1-201ENST00000609407 1511 ntBASIC24.45■■□□□ 1.5
PCDHGB3Q9Y5G1 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PCDHGB3Q9Y5G1 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.44■■□□□ 1.5
PCDHGB3Q9Y5G1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.43■■□□□ 1.5
PCDHGB3Q9Y5G1 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
PCDHGB3Q9Y5G1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGB3Q9Y5G1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
PCDHGB3Q9Y5G1 AC005559.1-201ENST00000589661 871 ntBASIC24.42■■□□□ 1.5
PCDHGB3Q9Y5G1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGB3Q9Y5G1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
PCDHGB3Q9Y5G1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
PCDHGB3Q9Y5G1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.41■■□□□ 1.5
PCDHGB3Q9Y5G1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 DUX4L28-201ENST00000623687 678 ntBASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
PCDHGB3Q9Y5G1 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHGB3Q9Y5G1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
PCDHGB3Q9Y5G1 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGB3Q9Y5G1 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.39■■□□□ 1.49
PCDHGB3Q9Y5G1 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
PCDHGB3Q9Y5G1 AC087741.3-201ENST00000624270 1347 ntBASIC24.38■■□□□ 1.49
PCDHGB3Q9Y5G1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.38■■□□□ 1.49
PCDHGB3Q9Y5G1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
PCDHGB3Q9Y5G1 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGB3Q9Y5G1 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
PCDHGB3Q9Y5G1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGB3Q9Y5G1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGB3Q9Y5G1 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
PCDHGB3Q9Y5G1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGB3Q9Y5G1 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
PCDHGB3Q9Y5G1 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGB3Q9Y5G1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGB3Q9Y5G1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGB3Q9Y5G1 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
PCDHGB3Q9Y5G1 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
PCDHGB3Q9Y5G1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGB3Q9Y5G1 AL139393.2-201ENST00000608721 2025 ntBASIC24.34■■□□□ 1.49
PCDHGB3Q9Y5G1 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGB3Q9Y5G1 AC044849.2-201ENST00000606596 710 ntBASIC24.34■■□□□ 1.49
PCDHGB3Q9Y5G1 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
PCDHGB3Q9Y5G1 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHGB3Q9Y5G1 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHGB3Q9Y5G1 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC24.33■■□□□ 1.49
PCDHGB3Q9Y5G1 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHGB3Q9Y5G1 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHGB3Q9Y5G1 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
PCDHGB3Q9Y5G1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.32■■□□□ 1.48
PCDHGB3Q9Y5G1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGB3Q9Y5G1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGB3Q9Y5G1 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGB3Q9Y5G1 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGB3Q9Y5G1 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.3■■□□□ 1.48
PCDHGB3Q9Y5G1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHGB3Q9Y5G1 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHGB3Q9Y5G1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHGB3Q9Y5G1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.28■■□□□ 1.48
PCDHGB3Q9Y5G1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGB3Q9Y5G1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
PCDHGB3Q9Y5G1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC24.27■■□□□ 1.48
PCDHGB3Q9Y5G1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHGB3Q9Y5G1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHGB3Q9Y5G1 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHGB3Q9Y5G1 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHGB3Q9Y5G1 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHGB3Q9Y5G1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.26■■□□□ 1.47
PCDHGB3Q9Y5G1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.25■■□□□ 1.47
PCDHGB3Q9Y5G1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHGB3Q9Y5G1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHGB3Q9Y5G1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHGB3Q9Y5G1 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.24■■□□□ 1.47
PCDHGB3Q9Y5G1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
PCDHGB3Q9Y5G1 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.23■■□□□ 1.47
PCDHGB3Q9Y5G1 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHGB3Q9Y5G1 DRD5P2-201ENST00000421395 2012 ntBASIC24.23■■□□□ 1.47
PCDHGB3Q9Y5G1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHGB3Q9Y5G1 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.22■■□□□ 1.47
PCDHGB3Q9Y5G1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHGB3Q9Y5G1 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.21■■□□□ 1.47
PCDHGB3Q9Y5G1 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC24.21■■□□□ 1.47
PCDHGB3Q9Y5G1 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC24.2■■□□□ 1.47
PCDHGB3Q9Y5G1 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGB3Q9Y5G1 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGB3Q9Y5G1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGB3Q9Y5G1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGB3Q9Y5G1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
PCDHGB3Q9Y5G1 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
PCDHGB3Q9Y5G1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.15■■□□□ 1.46
PCDHGB3Q9Y5G1 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHGB3Q9Y5G1 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
PCDHGB3Q9Y5G1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHGB3Q9Y5G1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHGB3Q9Y5G1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms