Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
LRRK1Q38SD2 ST7-AS1-201ENST00000456775 1889 ntBASIC25.97■■□□□ 1.75
LRRK1Q38SD2 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
LRRK1Q38SD2 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.97■■□□□ 1.75
LRRK1Q38SD2 ST7-202ENST00000323984 2142 ntTSL 5 BASIC25.96■■□□□ 1.75
LRRK1Q38SD2 ST7-207ENST00000393449 2127 ntTSL 5 BASIC25.96■■□□□ 1.75
LRRK1Q38SD2 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
LRRK1Q38SD2 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.95■■□□□ 1.75
LRRK1Q38SD2 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.95■■□□□ 1.75
LRRK1Q38SD2 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
LRRK1Q38SD2 ST7-205ENST00000393446 2114 ntTSL 5 BASIC25.93■■□□□ 1.74
LRRK1Q38SD2 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
LRRK1Q38SD2 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
LRRK1Q38SD2 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.93■■□□□ 1.74
LRRK1Q38SD2 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
LRRK1Q38SD2 MIR3648-2-201ENST00000581792 180 ntBASIC25.92■■□□□ 1.74
LRRK1Q38SD2 MIR3648-1-201ENST00000615959 180 ntBASIC25.92■■□□□ 1.74
LRRK1Q38SD2 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
LRRK1Q38SD2 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
LRRK1Q38SD2 AC135983.2-203ENST00000454486 1613 ntBASIC25.91■■□□□ 1.74
LRRK1Q38SD2 AC016575.1-201ENST00000607026 382 ntBASIC25.91■■□□□ 1.74
LRRK1Q38SD2 LINC01971-201ENST00000617888 1048 ntBASIC25.91■■□□□ 1.74
LRRK1Q38SD2 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
LRRK1Q38SD2 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.9■■□□□ 1.74
LRRK1Q38SD2 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
LRRK1Q38SD2 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.88■■□□□ 1.73
LRRK1Q38SD2 DUX4L11-201ENST00000611504 1267 ntBASIC25.88■■□□□ 1.73
LRRK1Q38SD2 DUX4L12-201ENST00000614593 1267 ntBASIC25.88■■□□□ 1.73
LRRK1Q38SD2 DUX4L14-201ENST00000621227 1267 ntBASIC25.88■■□□□ 1.73
LRRK1Q38SD2 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
LRRK1Q38SD2 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
LRRK1Q38SD2 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
LRRK1Q38SD2 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.88■■□□□ 1.73
LRRK1Q38SD2 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
LRRK1Q38SD2 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.87■■□□□ 1.73
LRRK1Q38SD2 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
LRRK1Q38SD2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.87■■□□□ 1.73
LRRK1Q38SD2 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
LRRK1Q38SD2 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
LRRK1Q38SD2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.86■■□□□ 1.73
LRRK1Q38SD2 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
LRRK1Q38SD2 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
LRRK1Q38SD2 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.85■■□□□ 1.73
LRRK1Q38SD2 WHAMMP2-203ENST00000563942 1603 ntBASIC25.85■■□□□ 1.73
LRRK1Q38SD2 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
LRRK1Q38SD2 AC127502.1-201ENST00000399971 1502 ntBASIC25.84■■□□□ 1.73
LRRK1Q38SD2 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.83■■□□□ 1.73
LRRK1Q38SD2 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
LRRK1Q38SD2 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
LRRK1Q38SD2 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.82■■□□□ 1.72
LRRK1Q38SD2 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
LRRK1Q38SD2 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L13-201ENST00000554103 1267 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L15-201ENST00000611059 1267 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L23-201ENST00000615195 1269 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L24-201ENST00000617576 1269 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L22-201ENST00000618238 1269 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L20-201ENST00000619712 1269 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L21-201ENST00000622058 1269 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L10-201ENST00000622460 1267 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 DUX4L25-201ENST00000624915 1269 ntBASIC25.8■■□□□ 1.72
LRRK1Q38SD2 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.8■■□□□ 1.72
LRRK1Q38SD2 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
LRRK1Q38SD2 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.8■■□□□ 1.72
LRRK1Q38SD2 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
LRRK1Q38SD2 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
LRRK1Q38SD2 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.78■■□□□ 1.72
LRRK1Q38SD2 ABCB10P1-201ENST00000614297 2181 ntBASIC25.78■■□□□ 1.72
LRRK1Q38SD2 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
LRRK1Q38SD2 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
LRRK1Q38SD2 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.77■■□□□ 1.72
LRRK1Q38SD2 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
LRRK1Q38SD2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.76■■□□□ 1.71
LRRK1Q38SD2 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.75■■□□□ 1.71
LRRK1Q38SD2 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.75■■□□□ 1.71
LRRK1Q38SD2 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
LRRK1Q38SD2 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
LRRK1Q38SD2 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
LRRK1Q38SD2 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.74■■□□□ 1.71
LRRK1Q38SD2 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.74■■□□□ 1.71
LRRK1Q38SD2 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
LRRK1Q38SD2 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
LRRK1Q38SD2 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.73■■□□□ 1.71
LRRK1Q38SD2 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.73■■□□□ 1.71
LRRK1Q38SD2 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
LRRK1Q38SD2 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
LRRK1Q38SD2 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.71■■□□□ 1.71
LRRK1Q38SD2 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
LRRK1Q38SD2 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.71■■□□□ 1.71
LRRK1Q38SD2 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.71■■□□□ 1.71
LRRK1Q38SD2 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
LRRK1Q38SD2 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC25.7■■□□□ 1.7
LRRK1Q38SD2 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms