Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGN4O00479 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGN4O00479 SUZ12P1-203ENST00000578195 985 ntBASIC24.18■■□□□ 1.46
HMGN4O00479 AC127502.1-201ENST00000399971 1502 ntBASIC24.18■■□□□ 1.46
HMGN4O00479 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGN4O00479 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGN4O00479 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGN4O00479 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGN4O00479 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC24.17■■□□□ 1.46
HMGN4O00479 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC24.17■■□□□ 1.46
HMGN4O00479 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.16■■□□□ 1.46
HMGN4O00479 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGN4O00479 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGN4O00479 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.16■■□□□ 1.46
HMGN4O00479 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.15■■□□□ 1.46
HMGN4O00479 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC24.15■■□□□ 1.46
HMGN4O00479 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
HMGN4O00479 AP004833.2-201ENST00000532228 1454 ntBASIC24.14■■□□□ 1.46
HMGN4O00479 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.14■■□□□ 1.45
HMGN4O00479 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.14■■□□□ 1.45
HMGN4O00479 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.14■■□□□ 1.45
HMGN4O00479 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
HMGN4O00479 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
HMGN4O00479 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.13■■□□□ 1.45
HMGN4O00479 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGN4O00479 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGN4O00479 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGN4O00479 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
HMGN4O00479 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
HMGN4O00479 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.13■■□□□ 1.45
HMGN4O00479 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGN4O00479 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGN4O00479 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC24.12■■□□□ 1.45
HMGN4O00479 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.11■■□□□ 1.45
HMGN4O00479 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
HMGN4O00479 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGN4O00479 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGN4O00479 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
HMGN4O00479 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
HMGN4O00479 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
HMGN4O00479 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
HMGN4O00479 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
HMGN4O00479 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
HMGN4O00479 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
HMGN4O00479 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.09■■□□□ 1.45
HMGN4O00479 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
HMGN4O00479 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
HMGN4O00479 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.08■■□□□ 1.45
HMGN4O00479 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
HMGN4O00479 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.07■■□□□ 1.44
HMGN4O00479 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.07■■□□□ 1.44
HMGN4O00479 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
HMGN4O00479 AC005559.1-201ENST00000589661 871 ntBASIC24.06■■□□□ 1.44
HMGN4O00479 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC24.06■■□□□ 1.44
HMGN4O00479 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
HMGN4O00479 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HMGN4O00479 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
HMGN4O00479 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
HMGN4O00479 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC24.04■■□□□ 1.44
HMGN4O00479 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.04■■□□□ 1.44
HMGN4O00479 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.03■■□□□ 1.44
HMGN4O00479 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
HMGN4O00479 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.02■■□□□ 1.44
HMGN4O00479 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGN4O00479 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
HMGN4O00479 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGN4O00479 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC24.01■■□□□ 1.43
HMGN4O00479 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGN4O00479 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGN4O00479 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
HMGN4O00479 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGN4O00479 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGN4O00479 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGN4O00479 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGN4O00479 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGN4O00479 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGN4O00479 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC23.99■■□□□ 1.43
HMGN4O00479 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGN4O00479 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HMGN4O00479 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGN4O00479 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
HMGN4O00479 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGN4O00479 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGN4O00479 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGN4O00479 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGN4O00479 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGN4O00479 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.97■■□□□ 1.43
HMGN4O00479 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGN4O00479 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC23.97■■□□□ 1.43
HMGN4O00479 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGN4O00479 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
HMGN4O00479 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGN4O00479 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.96■■□□□ 1.43
HMGN4O00479 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGN4O00479 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
HMGN4O00479 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.95■■□□□ 1.43
HMGN4O00479 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC23.95■■□□□ 1.43
HMGN4O00479 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
HMGN4O00479 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
HMGN4O00479 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms