Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV1-1A0A0B4J248 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.44■□□□□ 0.86
TRAV1-1A0A0B4J248 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV1-1A0A0B4J248 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TRAV1-1A0A0B4J248 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.42■□□□□ 0.86
TRAV1-1A0A0B4J248 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TRAV1-1A0A0B4J248 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
TRAV1-1A0A0B4J248 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.41■□□□□ 0.86
TRAV1-1A0A0B4J248 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
TRAV1-1A0A0B4J248 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.4■□□□□ 0.86
TRAV1-1A0A0B4J248 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.4■□□□□ 0.86
TRAV1-1A0A0B4J248 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV1-1A0A0B4J248 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
TRAV1-1A0A0B4J248 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.39■□□□□ 0.86
TRAV1-1A0A0B4J248 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
TRAV1-1A0A0B4J248 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
TRAV1-1A0A0B4J248 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRAV1-1A0A0B4J248 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.38■□□□□ 0.85
TRAV1-1A0A0B4J248 PKM-204ENST00000449901 2526 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAV1-1A0A0B4J248 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
TRAV1-1A0A0B4J248 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.38■□□□□ 0.85
TRAV1-1A0A0B4J248 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRAV1-1A0A0B4J248 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-1A0A0B4J248 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-1A0A0B4J248 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRAV1-1A0A0B4J248 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
TRAV1-1A0A0B4J248 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.37■□□□□ 0.85
TRAV1-1A0A0B4J248 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-1A0A0B4J248 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRAV1-1A0A0B4J248 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRAV1-1A0A0B4J248 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.33■□□□□ 0.85
TRAV1-1A0A0B4J248 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-1A0A0B4J248 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-1A0A0B4J248 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-1A0A0B4J248 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.33■□□□□ 0.84
TRAV1-1A0A0B4J248 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
TRAV1-1A0A0B4J248 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
TRAV1-1A0A0B4J248 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.31■□□□□ 0.84
TRAV1-1A0A0B4J248 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
TRAV1-1A0A0B4J248 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
TRAV1-1A0A0B4J248 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.3■□□□□ 0.84
TRAV1-1A0A0B4J248 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
TRAV1-1A0A0B4J248 SNAI3-AS1-204ENST00000567997 2048 ntBASIC20.3■□□□□ 0.84
TRAV1-1A0A0B4J248 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.3■□□□□ 0.84
TRAV1-1A0A0B4J248 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV1-1A0A0B4J248 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV1-1A0A0B4J248 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
TRAV1-1A0A0B4J248 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
TRAV1-1A0A0B4J248 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV1-1A0A0B4J248 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
TRAV1-1A0A0B4J248 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV1-1A0A0B4J248 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
TRAV1-1A0A0B4J248 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRAV1-1A0A0B4J248 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
TRAV1-1A0A0B4J248 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.26■□□□□ 0.83
TRAV1-1A0A0B4J248 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV1-1A0A0B4J248 LINC01003-201ENST00000564834 1764 ntBASIC20.26■□□□□ 0.83
TRAV1-1A0A0B4J248 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV1-1A0A0B4J248 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV1-1A0A0B4J248 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.24■□□□□ 0.83
TRAV1-1A0A0B4J248 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
TRAV1-1A0A0B4J248 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAV1-1A0A0B4J248 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAV1-1A0A0B4J248 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV1-1A0A0B4J248 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 AC091060.1-201ENST00000623524 1766 ntBASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
TRAV1-1A0A0B4J248 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV1-1A0A0B4J248 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV1-1A0A0B4J248 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV1-1A0A0B4J248 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV1-1A0A0B4J248 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms