Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.25■□□□□ 0.83
LDB2O43679 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
LDB2O43679 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.25■□□□□ 0.83
LDB2O43679 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB2O43679 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.25■□□□□ 0.83
LDB2O43679 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB2O43679 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.25■□□□□ 0.83
LDB2O43679 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LDB2O43679 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDB2O43679 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LDB2O43679 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDB2O43679 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LDB2O43679 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.24■□□□□ 0.83
LDB2O43679 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
LDB2O43679 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.24■□□□□ 0.83
LDB2O43679 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.24■□□□□ 0.83
LDB2O43679 AL589743.5-201ENST00000616611 1050 ntBASIC20.24■□□□□ 0.83
LDB2O43679 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.24■□□□□ 0.83
LDB2O43679 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDB2O43679 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
LDB2O43679 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDB2O43679 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.24■□□□□ 0.83
LDB2O43679 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LDB2O43679 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 MKRN4P-201ENST00000444706 1521 ntBASIC20.23■□□□□ 0.83
LDB2O43679 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 AC112907.3-201ENST00000577781 2400 ntBASIC20.23■□□□□ 0.83
LDB2O43679 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
LDB2O43679 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
LDB2O43679 AC006970.2-201ENST00000450065 779 ntBASIC20.23■□□□□ 0.83
LDB2O43679 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.23■□□□□ 0.83
LDB2O43679 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.23■□□□□ 0.83
LDB2O43679 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.23■□□□□ 0.83
LDB2O43679 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.23■□□□□ 0.83
LDB2O43679 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LDB2O43679 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LDB2O43679 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB2O43679 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.23■□□□□ 0.83
LDB2O43679 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB2O43679 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
LDB2O43679 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.22■□□□□ 0.83
LDB2O43679 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB2O43679 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.22■□□□□ 0.83
LDB2O43679 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
LDB2O43679 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.22■□□□□ 0.83
LDB2O43679 AC083906.2-201ENST00000511578 360 ntBASIC20.22■□□□□ 0.83
LDB2O43679 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB2O43679 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB2O43679 PTBP1P-201ENST00000554374 1601 ntBASIC20.22■□□□□ 0.83
LDB2O43679 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.22■□□□□ 0.83
LDB2O43679 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDB2O43679 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.21■□□□□ 0.83
LDB2O43679 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
LDB2O43679 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 NCF1B-203ENST00000435988 1254 ntBASIC20.21■□□□□ 0.83
LDB2O43679 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.21■□□□□ 0.83
LDB2O43679 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.21■□□□□ 0.83
LDB2O43679 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.21■□□□□ 0.83
LDB2O43679 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.21■□□□□ 0.83
LDB2O43679 AL121832.2-201ENST00000610979 668 ntBASIC20.21■□□□□ 0.83
LDB2O43679 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.21■□□□□ 0.83
LDB2O43679 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB2O43679 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.2■□□□□ 0.82
LDB2O43679 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.2■□□□□ 0.82
LDB2O43679 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB2O43679 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms