Protein–RNA interactions for Protein: P43588

RPN11, Ubiquitin carboxyl-terminal hydrolase RPN11, yeastyeast

Known RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN11P43588 USO1YDL058W 5373 nt2.33□□□□□ -2.04
RPN11P43588 SEC16YPL085W 6588 nt2.33□□□□□ -2.04
RPN11P43588 FMP16YDR070C 282 nt2.33□□□□□ -2.04
RPN11P43588 NOP10YHR072W-A 177 nt2.33□□□□□ -2.04
RPN11P43588 GRX8YLR364W 330 nt2.33□□□□□ -2.04
RPN11P43588 RPS29AYLR388W 171 nt2.33□□□□□ -2.04
RPN11P43588 RPS18BYML026C 441 nt2.33□□□□□ -2.04
RPN11P43588 CRS5YOR031W 210 nt2.33□□□□□ -2.04
RPN11P43588 SWT1YOR166C 1377 nt2.33□□□□□ -2.04
RPN11P43588 SMY2YBR172C 2223 nt2.33□□□□□ -2.04
RPN11P43588 YNL018CYNL018C 1839 nt2.33□□□□□ -2.04
RPN11P43588 INP51YIL002C 2841 nt2.32□□□□□ -2.04
RPN11P43588 SIR3YLR442C 2937 nt2.32□□□□□ -2.04
RPN11P43588 YFR016CYFR016C 3702 nt2.32□□□□□ -2.04
RPN11P43588 HER1YOR227W 3741 nt2.32□□□□□ -2.04
RPN11P43588 TMA22YJR014W 597 nt2.32□□□□□ -2.04
RPN11P43588 YPL238CYPL238C 390 nt2.32□□□□□ -2.04
RPN11P43588 GNT1YOR320C 1476 nt2.32□□□□□ -2.04
RPN11P43588 SGM1YJR134C 2124 nt2.32□□□□□ -2.04
RPN11P43588 SXM1YDR395W 2835 nt2.32□□□□□ -2.04
RPN11P43588 PRK1YIL095W 2433 nt2.31□□□□□ -2.04
RPN11P43588 SNC1YAL030W 354 nt2.31□□□□□ -2.04
RPN11P43588 YML003WYML003W 873 nt2.31□□□□□ -2.04
RPN11P43588 RGA2YDR379W 3030 nt2.31□□□□□ -2.04
RPN11P43588 RRP6YOR001W 2202 nt2.31□□□□□ -2.04
RPN11P43588 NAN1YPL126W 2691 nt2.31□□□□□ -2.04
RPN11P43588 YKU80YMR106C 1890 nt2.31□□□□□ -2.04
RPN11P43588 MLH1YMR167W 2310 nt2.3□□□□□ -2.04
RPN11P43588 UBR2YLR024C 5619 nt2.3□□□□□ -2.04
RPN11P43588 YGR035CYGR035C 351 nt2.3□□□□□ -2.04
RPN11P43588 RPS20YHL015W 366 nt2.3□□□□□ -2.04
RPN11P43588 PCF11YDR228C 1881 nt2.3□□□□□ -2.04
RPN11P43588 SWA2YDR320C 2007 nt2.3□□□□□ -2.04
RPN11P43588 VPH1YOR270C 2523 nt2.29□□□□□ -2.04
RPN11P43588 ORC2YBR060C 1863 nt2.29□□□□□ -2.04
RPN11P43588 WIP1YDR374W-A 270 nt2.29□□□□□ -2.04
RPN11P43588 YER121WYER121W 345 nt2.29□□□□□ -2.04
RPN11P43588 SMD1YGR074W 441 nt2.29□□□□□ -2.04
RPN11P43588 FCF2YLR051C 654 nt2.29□□□□□ -2.04
RPN11P43588 HCH1YNL281W 462 nt2.29□□□□□ -2.04
RPN11P43588 ACM1YPL267W 630 nt2.29□□□□□ -2.04
RPN11P43588 YPR016W-AYPR016W-A 261 nt2.29□□□□□ -2.04
RPN11P43588 SOK2YMR016C 2358 nt2.28□□□□□ -2.04
RPN11P43588 CDC50YCR094W 1176 nt2.28□□□□□ -2.04
RPN11P43588 QCR7YDR529C 384 nt2.28□□□□□ -2.04
RPN11P43588 YJR011CYJR011C 786 nt2.28□□□□□ -2.04
RPN11P43588 RPL26AYLR344W 384 nt2.28□□□□□ -2.04
RPN11P43588 DGR1YNL130C-A 147 nt2.28□□□□□ -2.04
RPN11P43588 PGA1YNL158W 597 nt2.28□□□□□ -2.04
RPN11P43588 CBF2YGR140W 2871 nt2.27□□□□□ -2.05
RPN11P43588 HSL1YKL101W 4557 nt2.26□□□□□ -2.05
RPN11P43588 SNC2YOR327C 348 nt2.26□□□□□ -2.05
RPN11P43588 YPL225WYPL225W 441 nt2.26□□□□□ -2.05
RPN11P43588 CSF1YLR087C 8877 nt2.25□□□□□ -2.05
RPN11P43588 SGD1YLR336C 2700 nt2.25□□□□□ -2.05
RPN11P43588 HYP2YEL034W 474 nt2.25□□□□□ -2.05
RPN11P43588 YER079C-AYER079C-A 339 nt2.25□□□□□ -2.05
RPN11P43588 tW(UCA)QtW(UCA)Q 74 nt2.25□□□□□ -2.05
RPN11P43588 GIS1YDR096W 2685 nt2.25□□□□□ -2.05
RPN11P43588 DOT6YER088C 2013 nt2.25□□□□□ -2.05
RPN11P43588 TOR2YKL203C 7425 nt2.25□□□□□ -2.05
RPN11P43588 SPP41YDR464W 4308 nt2.25□□□□□ -2.05
RPN11P43588 CDC60YPL160W 3273 nt2.24□□□□□ -2.05
RPN11P43588 MSL1YIR009W 336 nt2.24□□□□□ -2.05
RPN11P43588 CGI121YML036W 546 nt2.24□□□□□ -2.05
RPN11P43588 VTI1YMR197C 654 nt2.24□□□□□ -2.05
RPN11P43588 RPL9BYNL067W 576 nt2.24□□□□□ -2.05
RPN11P43588 YOR394C-AYOR394C-A 168 nt2.24□□□□□ -2.05
RPN11P43588 VPS35YJL154C 2835 nt2.24□□□□□ -2.05
RPN11P43588 SAK1YER129W 3429 nt2.24□□□□□ -2.05
RPN11P43588 YOL098CYOL098C 3114 nt2.24□□□□□ -2.05
RPN11P43588 SSK2YNR031C 4740 nt2.23□□□□□ -2.05
RPN11P43588 NOT5YPR072W 1683 nt2.23□□□□□ -2.05
RPN11P43588 YDL240C-AYDL240C-A 138 nt2.23□□□□□ -2.05
RPN11P43588 PAU2YEL049W 363 nt2.23□□□□□ -2.05
RPN11P43588 PAU12YGR294W 363 nt2.23□□□□□ -2.05
RPN11P43588 PAU18YLL064C 363 nt2.23□□□□□ -2.05
RPN11P43588 YAR053WYAR053W 297 nt2.23□□□□□ -2.05
RPN11P43588 COA6YMR244C-A 315 nt2.23□□□□□ -2.05
RPN11P43588 PAU6YNR076W 363 nt2.23□□□□□ -2.05
RPN11P43588 PAU24YBR301W 363 nt2.23□□□□□ -2.05
RPN11P43588 AFI1YOR129C 2682 nt2.23□□□□□ -2.05
RPN11P43588 SDC1YDR469W 528 nt2.22□□□□□ -2.05
RPN11P43588 PHS1YJL097W 654 nt2.22□□□□□ -2.05
RPN11P43588 YKL083WYKL083W 615 nt2.22□□□□□ -2.05
RPN11P43588 PAU8YAL068C 363 nt2.22□□□□□ -2.05
RPN11P43588 ISF1YMR081C 1017 nt2.22□□□□□ -2.05
RPN11P43588 PAU20YOL161C 363 nt2.22□□□□□ -2.05
RPN11P43588 YBR224WYBR224W 516 nt2.22□□□□□ -2.05
RPN11P43588 PIP2YOR363C 2991 nt2.21□□□□□ -2.06
RPN11P43588 YGL069CYGL069C 465 nt2.21□□□□□ -2.06
RPN11P43588 YIL066W-AYIL066W-A 444 nt2.21□□□□□ -2.06
RPN11P43588 YJR003CYJR003C 1560 nt2.21□□□□□ -2.06
RPN11P43588 YAF9YNL107W 681 nt2.21□□□□□ -2.06
RPN11P43588 PAC1YOR269W 1485 nt2.2□□□□□ -2.06
RPN11P43588 YEL043WYEL043W 2871 nt2.2□□□□□ -2.06
RPN11P43588 YPR097WYPR097W 3222 nt2.2□□□□□ -2.06
RPN11P43588 YDL011CYDL011C 324 nt2.2□□□□□ -2.06
RPN11P43588 MRPL31YKL138C 396 nt2.2□□□□□ -2.06
RPN11P43588 UTP30YKR060W 825 nt2.2□□□□□ -2.06
Retrieved 100 of 7,029 protein–RNA pairs in 29 ms