Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM1O15116 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
LSM1O15116 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.58■□□□□ 0.72
LSM1O15116 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
LSM1O15116 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM1O15116 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM1O15116 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
LSM1O15116 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LSM1O15116 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.57■□□□□ 0.72
LSM1O15116 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.57■□□□□ 0.72
LSM1O15116 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 SLC7A5P1-201ENST00000568957 537 ntBASIC19.57■□□□□ 0.72
LSM1O15116 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.57■□□□□ 0.72
LSM1O15116 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.57■□□□□ 0.72
LSM1O15116 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 SMG8-203ENST00000578922 2178 ntBASIC19.57■□□□□ 0.72
LSM1O15116 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.57■□□□□ 0.72
LSM1O15116 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LSM1O15116 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.57■□□□□ 0.72
LSM1O15116 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LSM1O15116 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
LSM1O15116 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.56■□□□□ 0.72
LSM1O15116 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
LSM1O15116 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
LSM1O15116 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.56■□□□□ 0.72
LSM1O15116 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.56■□□□□ 0.72
LSM1O15116 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.56■□□□□ 0.72
LSM1O15116 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.56■□□□□ 0.72
LSM1O15116 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.56■□□□□ 0.72
LSM1O15116 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.56■□□□□ 0.72
LSM1O15116 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.56■□□□□ 0.72
LSM1O15116 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
LSM1O15116 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
LSM1O15116 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.55■□□□□ 0.72
LSM1O15116 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
LSM1O15116 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.55■□□□□ 0.72
LSM1O15116 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.55■□□□□ 0.72
LSM1O15116 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.55■□□□□ 0.72
LSM1O15116 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.55■□□□□ 0.72
LSM1O15116 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LSM1O15116 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LSM1O15116 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LSM1O15116 AC019069.1-201ENST00000610008 1333 ntBASIC19.54■□□□□ 0.72
LSM1O15116 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
LSM1O15116 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
LSM1O15116 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LSM1O15116 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LSM1O15116 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LSM1O15116 AC007322.3-201ENST00000426526 701 ntBASIC19.54■□□□□ 0.72
LSM1O15116 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LSM1O15116 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.54■□□□□ 0.72
LSM1O15116 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.54■□□□□ 0.72
LSM1O15116 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.54■□□□□ 0.72
LSM1O15116 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LSM1O15116 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.54■□□□□ 0.72
LSM1O15116 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LSM1O15116 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LSM1O15116 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LSM1O15116 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 KRT8P36-201ENST00000489121 1440 ntBASIC19.53■□□□□ 0.72
LSM1O15116 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.53■□□□□ 0.72
LSM1O15116 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.53■□□□□ 0.72
LSM1O15116 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LSM1O15116 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms