RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 NISCHQ9Y2I1 1504 aa40.03■■■■■ 4
CRLF3-201ENST00000324238 SHROOM4Q9ULL8 1493 aa35.16■■■■□ 3.22
CRLF3-201ENST00000324238 SUPT5HO00267 1087 aaKnown RBP34.58■■■■□ 3.13
CRLF3-201ENST00000324238 DCAF8L2P0C7V8 631 aa34.45■■■■□ 3.11
CRLF3-201ENST00000324238 ZCCHC6Q5VYS8 1495 aaKnown RBP33.75■■■□□ 2.99
CRLF3-201ENST00000324238 CCDC180Q9P1Z9 1646 aa33.53■■■□□ 2.96
CRLF3-201ENST00000324238 CHIC1Q5VXU3 224 aa33.41■■■□□ 2.94
CRLF3-201ENST00000324238 MYO15BQ96JP2 1530 aa33.38■■■□□ 2.93
CRLF3-201ENST00000324238 PCGF6Q9BYE7 350 aa33.03■■■□□ 2.88
CRLF3-201ENST00000324238 HRCP23327 699 aa32.89■■■□□ 2.86
CRLF3-201ENST00000324238 LOC105371045A0A1W2PR82 267 aa32.82■■■□□ 2.84
CRLF3-201ENST00000324238 PPARGC1BQ86YN6 1023 aaKnown RBP32.69■■■□□ 2.82
CRLF3-201ENST00000324238 DCAF1Q9Y4B6 1507 aa32.36■■■□□ 2.77
CRLF3-201ENST00000324238 SCRIBQ14160 1630 aa32.19■■■□□ 2.74
CRLF3-201ENST00000324238 EHMT2Q96KQ7 1210 aa32.17■■■□□ 2.74
CRLF3-201ENST00000324238 FAM9AQ8IZU1 332 aaPredicted RBP32.1■■■□□ 2.73
CRLF3-201ENST00000324238 ABCC9O60706 1549 aa32.08■■■□□ 2.73
CRLF3-201ENST00000324238 TRIM26Q12899 539 aaPredicted RBP31.91■■■□□ 2.7
CRLF3-201ENST00000324238 TRIM41Q8WV44 630 aa31.9■■■□□ 2.7
CRLF3-201ENST00000324238 RSF1Q96T23 1441 aaPredicted RBP31.89■■■□□ 2.7
CRLF3-201ENST00000324238 CECR2Q9BXF3 1484 aa31.61■■■□□ 2.65
CRLF3-201ENST00000324238 RB1CC1Q8TDY2 1594 aa31.57■■■□□ 2.65
CRLF3-201ENST00000324238 MROH2BQ7Z745 1585 aa31.34■■■□□ 2.61
CRLF3-201ENST00000324238 NACADO15069 1562 aa31.23■■■□□ 2.59
CRLF3-201ENST00000324238 WIZO95785 1651 aa31.15■■■□□ 2.58
CRLF3-201ENST00000324238 TTBK1Q5TCY1 1321 aaPredicted RBP31.13■■■□□ 2.57
CRLF3-201ENST00000324238 ZEB1P37275 1124 aaPredicted RBP31.11■■■□□ 2.57
CRLF3-201ENST00000324238 PABPN1Q86U42 306 aaKnown RBP eCLIP31.04■■■□□ 2.56
CRLF3-201ENST00000324238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.99■■■□□ 2.55
CRLF3-201ENST00000324238 CCER1Q8TC90 406 aaPredicted RBP30.78■■■□□ 2.52
CRLF3-201ENST00000324238 SCAF1Q9H7N4 1312 aaKnown RBP30.72■■■□□ 2.51
CRLF3-201ENST00000324238 BAZ1AQ9NRL2 1556 aaPredicted RBP30.66■■■□□ 2.5
CRLF3-201ENST00000324238 ABCC8Q09428 1581 aa30.66■■■□□ 2.5
CRLF3-201ENST00000324238 CCDC88BA6NC98 1476 aa30.56■■■□□ 2.48
CRLF3-201ENST00000324238 UBTFP17480 764 aaKnown RBP30.48■■■□□ 2.47
CRLF3-201ENST00000324238 SOGA1O94964 1423 aa30.47■■■□□ 2.47
CRLF3-201ENST00000324238 SMARCA4P51532 1647 aa30.43■■■□□ 2.46
CRLF3-201ENST00000324238 RANGAP1P46060 587 aaPredicted RBP30.39■■■□□ 2.46
CRLF3-201ENST00000324238 EIF4G1Q04637 1599 aaKnown RBP30.38■■■□□ 2.45
CRLF3-201ENST00000324238 TOP2AP11388 1531 aaKnown RBP30.38■■■□□ 2.45
CRLF3-201ENST00000324238 RUSC2Q8N2Y8 1516 aa30.36■■■□□ 2.45
CRLF3-201ENST00000324238 CEP162Q5TB80 1403 aa30.33■■■□□ 2.45
CRLF3-201ENST00000324238 UNC13AQ9UPW8 1703 aa30.32■■■□□ 2.44
CRLF3-201ENST00000324238 SMARCA2P51531 1590 aa30.31■■■□□ 2.44
CRLF3-201ENST00000324238 NEUROD1Q13562 356 aa30.28■■■□□ 2.44
CRLF3-201ENST00000324238 DIEXFQ68CQ4 756 aaKnown RBP30.27■■■□□ 2.44
CRLF3-201ENST00000324238 CSRNP3Q8WYN3 585 aa30.27■■■□□ 2.44
CRLF3-201ENST00000324238 ACIN1Q9UKV3 1341 aaKnown RBP30.15■■■□□ 2.42
CRLF3-201ENST00000324238 HNRNPUL2Q1KMD3 747 aaKnown RBP30.12■■■□□ 2.41
CRLF3-201ENST00000324238 TNIKQ9UKE5 1360 aa30.09■■■□□ 2.41
CRLF3-201ENST00000324238 BICRAQ9NZM4 1560 aa30.07■■■□□ 2.4
CRLF3-201ENST00000324238 WRNQ14191 1432 aaPredicted RBP eCLIP30.06■■■□□ 2.4
CRLF3-201ENST00000324238 GTF3C3Q9Y5Q9 886 aa30.01■■■□□ 2.4
CRLF3-201ENST00000324238 YTHDC1Q96MU7 727 aaKnown RBP29.98■■■□□ 2.39
CRLF3-201ENST00000324238 PELP1Q8IZL8 1130 aaKnown RBP29.85■■■□□ 2.37
CRLF3-201ENST00000324238 GOLGA3Q08378 1498 aa29.84■■■□□ 2.37
CRLF3-201ENST00000324238 ZNF316A6NFI3 1004 aaPredicted RBP29.84■■■□□ 2.37
CRLF3-201ENST00000324238 CENPBP07199 599 aaPredicted RBP29.83■■■□□ 2.37
CRLF3-201ENST00000324238 ATAD2BQ9ULI0 1458 aa29.81■■■□□ 2.36
CRLF3-201ENST00000324238 BAZ1BQ9UIG0 1483 aaKnown RBP29.8■■■□□ 2.36
CRLF3-201ENST00000324238 EEA1Q15075 1411 aa29.78■■■□□ 2.36
CRLF3-201ENST00000324238 SYNJ1O43426 1573 aa29.75■■■□□ 2.35
CRLF3-201ENST00000324238 CLIP1P30622 1438 aa29.7■■■□□ 2.35
CRLF3-201ENST00000324238 APLP2Q06481 763 aa29.69■■■□□ 2.34
CRLF3-201ENST00000324238 MIER1Q8N108 512 aa29.69■■■□□ 2.34
CRLF3-201ENST00000324238 RAPGEF2Q9Y4G8 1499 aa29.6■■■□□ 2.33
CRLF3-201ENST00000324238 CEP164Q9UPV0 1460 aa29.6■■■□□ 2.33
CRLF3-201ENST00000324238 PEG3Q9GZU2 1588 aa29.52■■■□□ 2.32
CRLF3-201ENST00000324238 VPS8Q8N3P4 1428 aa29.47■■■□□ 2.31
CRLF3-201ENST00000324238 KANK4Q5T7N3 995 aaPredicted RBP29.38■■■□□ 2.29
CRLF3-201ENST00000324238 KIF21BO75037 1637 aa29.37■■■□□ 2.29
CRLF3-201ENST00000324238 ITGAEP38570 1179 aa29.34■■■□□ 2.29
CRLF3-201ENST00000324238 TOP2BQ02880 1626 aa29.16■■■□□ 2.26
CRLF3-201ENST00000324238 DHX57Q6P158 1386 aaKnown RBP29.11■■■□□ 2.25
CRLF3-201ENST00000324238 ATP1B4Q9UN42 357 aaPredicted RBP29.1■■■□□ 2.25
CRLF3-201ENST00000324238 CUX1P39880 1505 aa29.1■■■□□ 2.25
CRLF3-201ENST00000324238 P3H3Q8IVL6 736 aa29.09■■■□□ 2.25
CRLF3-201ENST00000324238 ARAP1Q96P48 1450 aa29.08■■■□□ 2.25
CRLF3-201ENST00000324238 NCAPD3P42695 1498 aa29.07■■■□□ 2.24
CRLF3-201ENST00000324238 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
CRLF3-201ENST00000324238 PRXQ9BXM0 1461 aa29.01■■■□□ 2.23
CRLF3-201ENST00000324238 CFTRP13569 1480 aa28.9■■■□□ 2.22
CRLF3-201ENST00000324238 BIVM-ERCC5R4GMW8 1640 aa28.9■■■□□ 2.22
CRLF3-201ENST00000324238 CUX2O14529 1486 aa28.9■■■□□ 2.22
CRLF3-201ENST00000324238 KCNH8Q96L42 1107 aa28.87■■■□□ 2.21
CRLF3-201ENST00000324238 HMGXB3Q12766 1538 aa28.86■■■□□ 2.21
CRLF3-201ENST00000324238 CCNB3Q8WWL7 1395 aa28.82■■■□□ 2.2
CRLF3-201ENST00000324238 ERICH3Q5RHP9 1530 aa28.82■■■□□ 2.2
CRLF3-201ENST00000324238 IGF1RP08069 1367 aa28.8■■■□□ 2.2
CRLF3-201ENST00000324238 ARHGAP35Q9NRY4 1499 aa28.8■■■□□ 2.2
CRLF3-201ENST00000324238 CLSPNQ9HAW4 1339 aa28.77■■■□□ 2.2
CRLF3-201ENST00000324238 FAM50AQ14320 339 aaKnown RBP28.76■■■□□ 2.19
CRLF3-201ENST00000324238 CADPSQ9ULU8 1353 aa28.75■■■□□ 2.19
CRLF3-201ENST00000324238 RRBP1Q9P2E9 1410 aaKnown RBP28.75■■■□□ 2.19
CRLF3-201ENST00000324238 SIN3AQ96ST3 1273 aa28.74■■■□□ 2.19
CRLF3-201ENST00000324238 HIRIP3Q9BW71 556 aaPredicted RBP28.73■■■□□ 2.19
CRLF3-201ENST00000324238 CARMIL1Q5VZK9 1371 aa28.73■■■□□ 2.19
CRLF3-201ENST00000324238 SUPT16HQ9Y5B9 1047 aaKnown RBP28.71■■■□□ 2.19
CRLF3-201ENST00000324238 RAB3GAP2Q9H2M9 1393 aa28.7■■■□□ 2.19
CRLF3-201ENST00000324238 FGD5Q6ZNL6 1462 aa28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms