Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 CDC33YOL139C 642 nt2.33□□□□□ -2.04
SHP1P34223 MF(ALPHA)1YPL187W 498 nt2.33□□□□□ -2.04
SHP1P34223 TSC3YBR058C-A 243 nt2.33□□□□□ -2.04
SHP1P34223 PES4YFR023W 1836 nt2.33□□□□□ -2.04
SHP1P34223 TRA1YHR099W 11235 nt2.33□□□□□ -2.04
SHP1P34223 KSP1YHR082C 3090 nt2.33□□□□□ -2.04
SHP1P34223 DNF1YER166W 4716 nt2.32□□□□□ -2.04
SHP1P34223 RRP12YPL012W 3687 nt2.32□□□□□ -2.04
SHP1P34223 CSF1YLR087C 8877 nt2.32□□□□□ -2.04
SHP1P34223 YGR025WYGR025W 303 nt2.32□□□□□ -2.04
SHP1P34223 YGR050CYGR050C 357 nt2.32□□□□□ -2.04
SHP1P34223 CRG1YHR209W 876 nt2.32□□□□□ -2.04
SHP1P34223 YHR214W-AYHR214W-A 486 nt2.32□□□□□ -2.04
SHP1P34223 YLR031WYLR031W 561 nt2.32□□□□□ -2.04
SHP1P34223 YAR068WYAR068W 486 nt2.32□□□□□ -2.04
SHP1P34223 SAS2YMR127C 1017 nt2.32□□□□□ -2.04
SHP1P34223 YBR032WYBR032W 303 nt2.32□□□□□ -2.04
SHP1P34223 ATP3YBR039W 936 nt2.32□□□□□ -2.04
SHP1P34223 YPR039WYPR039W 336 nt2.32□□□□□ -2.04
SHP1P34223 RLI1YDR091C 1827 nt2.32□□□□□ -2.04
SHP1P34223 AMS1YGL156W 3252 nt2.32□□□□□ -2.04
SHP1P34223 SAK1YER129W 3429 nt2.31□□□□□ -2.04
SHP1P34223 BTT1YDR252W 450 nt2.31□□□□□ -2.04
SHP1P34223 ACB1YGR037C 264 nt2.31□□□□□ -2.04
SHP1P34223 snR13snR13 124 nt2.31□□□□□ -2.04
SHP1P34223 SPO23YBR250W 1572 nt2.31□□□□□ -2.04
SHP1P34223 INP51YIL002C 2841 nt2.3□□□□□ -2.04
SHP1P34223 YDR118W-AYDR118W-A 117 nt2.3□□□□□ -2.04
SHP1P34223 YDR157WYDR157W 402 nt2.3□□□□□ -2.04
SHP1P34223 IES5YER092W 378 nt2.3□□□□□ -2.04
SHP1P34223 YJL052C-AYJL052C-A 120 nt2.3□□□□□ -2.04
SHP1P34223 YMR001C-AYMR001C-A 231 nt2.3□□□□□ -2.04
SHP1P34223 COX7YMR256C 183 nt2.3□□□□□ -2.04
SHP1P34223 LEE1YPL054W 906 nt2.3□□□□□ -2.04
SHP1P34223 TOR1YJR066W 7413 nt2.3□□□□□ -2.04
SHP1P34223 YJL016WYJL016W 1686 nt2.3□□□□□ -2.04
SHP1P34223 TRS130YMR218C 3309 nt2.3□□□□□ -2.04
SHP1P34223 INO80YGL150C 4470 nt2.3□□□□□ -2.04
SHP1P34223 GYP5YPL249C 2685 nt2.29□□□□□ -2.04
SHP1P34223 SMY2YBR172C 2223 nt2.29□□□□□ -2.04
SHP1P34223 RRF1YHR038W 693 nt2.29□□□□□ -2.04
SHP1P34223 YHR139C-AYHR139C-A 312 nt2.29□□□□□ -2.04
SHP1P34223 HOS4YIL112W 3252 nt2.29□□□□□ -2.04
SHP1P34223 PRK1YIL095W 2433 nt2.29□□□□□ -2.04
SHP1P34223 VPS52YDR484W 1926 nt2.29□□□□□ -2.04
SHP1P34223 YKU80YMR106C 1890 nt2.28□□□□□ -2.04
SHP1P34223 TOP2YNL088W 4287 nt2.28□□□□□ -2.04
SHP1P34223 ATP17YDR377W 306 nt2.28□□□□□ -2.04
SHP1P34223 YER079WYER079W 633 nt2.28□□□□□ -2.04
SHP1P34223 LSM7YNL147W 348 nt2.28□□□□□ -2.04
SHP1P34223 VPS16YPL045W 2397 nt2.28□□□□□ -2.05
SHP1P34223 UBP11YKR098C 2154 nt2.27□□□□□ -2.05
SHP1P34223 REV1YOR346W 2958 nt2.27□□□□□ -2.05
SHP1P34223 MLH1YMR167W 2310 nt2.27□□□□□ -2.05
SHP1P34223 YER068C-AYER068C-A 432 nt2.27□□□□□ -2.05
SHP1P34223 YGL014C-AYGL014C-A 162 nt2.27□□□□□ -2.05
SHP1P34223 YBR277CYBR277C 402 nt2.27□□□□□ -2.05
SHP1P34223 HSC82YMR186W 2118 nt2.27□□□□□ -2.05
SHP1P34223 IPT1YDR072C 1584 nt2.27□□□□□ -2.05
SHP1P34223 NAN1YPL126W 2691 nt2.26□□□□□ -2.05
SHP1P34223 NIC96YFR002W 2520 nt2.26□□□□□ -2.05
SHP1P34223 PTC5YOR090C 1719 nt2.26□□□□□ -2.05
SHP1P34223 PHO2YDL106C 1680 nt2.26□□□□□ -2.05
SHP1P34223 YDL025W-AYDL025W-A 105 nt2.26□□□□□ -2.05
SHP1P34223 PEX4YGR133W 552 nt2.26□□□□□ -2.05
SHP1P34223 PET191YJR034W 327 nt2.26□□□□□ -2.05
SHP1P34223 SHE2YKL130C 741 nt2.26□□□□□ -2.05
SHP1P34223 MPH1YIR002C 2982 nt2.26□□□□□ -2.05
SHP1P34223 SNX41YDR425W 1878 nt2.26□□□□□ -2.05
SHP1P34223 NCL1YBL024W 2055 nt2.26□□□□□ -2.05
SHP1P34223 SNU114YKL173W 3027 nt2.25□□□□□ -2.05
SHP1P34223 CBF2YGR140W 2871 nt2.25□□□□□ -2.05
SHP1P34223 snR56snR56 88 nt2.25□□□□□ -2.05
SHP1P34223 YDL041WYDL041W 354 nt2.25□□□□□ -2.05
SHP1P34223 YDR269CYDR269C 324 nt2.25□□□□□ -2.05
SHP1P34223 YFR056CYFR056C 369 nt2.25□□□□□ -2.05
SHP1P34223 YMR324CYMR324C 243 nt2.25□□□□□ -2.05
SHP1P34223 YOL159CYOL159C 516 nt2.25□□□□□ -2.05
SHP1P34223 ROX1YPR065W 1107 nt2.25□□□□□ -2.05
SHP1P34223 IRC10YOL015W 1761 nt2.25□□□□□ -2.05
SHP1P34223 YJL070CYJL070C 2667 nt2.24□□□□□ -2.05
SHP1P34223 ORC2YBR060C 1863 nt2.24□□□□□ -2.05
SHP1P34223 YNL018CYNL018C 1839 nt2.24□□□□□ -2.05
SHP1P34223 SAP185YJL098W 3177 nt2.24□□□□□ -2.05
SHP1P34223 SPF1YEL031W 3648 nt2.24□□□□□ -2.05
SHP1P34223 FMP16YDR070C 282 nt2.24□□□□□ -2.05
SHP1P34223 MZM1YDR493W 372 nt2.24□□□□□ -2.05
SHP1P34223 YHR138CYHR138C 345 nt2.24□□□□□ -2.05
SHP1P34223 ZEO1YOL109W 342 nt2.24□□□□□ -2.05
SHP1P34223 EGD1YPL037C 474 nt2.24□□□□□ -2.05
SHP1P34223 YPR012WYPR012W 255 nt2.24□□□□□ -2.05
SHP1P34223 PEX8YGR077C 1770 nt2.23□□□□□ -2.05
SHP1P34223 SDC1YDR469W 528 nt2.23□□□□□ -2.05
SHP1P34223 YER087C-AYER087C-A 552 nt2.23□□□□□ -2.05
SHP1P34223 VOA1YGR106C 798 nt2.23□□□□□ -2.05
SHP1P34223 ANS1YHR126C 480 nt2.23□□□□□ -2.05
SHP1P34223 YML084WYML084W 309 nt2.23□□□□□ -2.05
SHP1P34223 YMR320WYMR320W 306 nt2.23□□□□□ -2.05
SHP1P34223 YNL010WYNL010W 726 nt2.23□□□□□ -2.05
SHP1P34223 YOR192C-CYOR192C-C 237 nt2.23□□□□□ -2.05
Retrieved 100 of 7,029 protein–RNA pairs in 51.3 ms