RNA–Protein interactions for RNA: YKL130C

SHE2, Transcript of RNA-binding protein that binds specific mRNAs and interacts with She3p, yeastyeast

Gene SHE2, Length 741 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHE2YKL130C MTC1P47018 478 aaKnown RBP11.22□□□□□ -0.61
SHE2YKL130C FAP1P53971 965 aa10.45□□□□□ -0.74
SHE2YKL130C DRS1P32892 752 aaKnown RBP10.29□□□□□ -0.76
SHE2YKL130C PRY3P47033 881 aa9.85□□□□□ -0.83
SHE2YKL130C PRI1P10363 409 aa9.68□□□□□ -0.86
SHE2YKL130C AAD16Q02895 342 aa9.65□□□□□ -0.86
SHE2YKL130C YCK3P39962 524 aa9.41□□□□□ -0.9
SHE2YKL130C ISW2Q08773 1120 aa9.35□□□□□ -0.91
SHE2YKL130C RPG1P38249 964 aaKnown RBP9.27□□□□□ -0.93
SHE2YKL130C HAA1Q12753 694 aaKnown RBP9.25□□□□□ -0.93
SHE2YKL130C TSR3Q12094 313 aaKnown RBP9.1□□□□□ -0.95
SHE2YKL130C DIP2Q12220 943 aaPredicted RBP9.08□□□□□ -0.96
SHE2YKL130C RSE1Q04693 1361 aaKnown RBP8.85□□□□□ -0.99
SHE2YKL130C MRPL32P25348 183 aa8.73□□□□□ -1.01
SHE2YKL130C AVT3P36062 692 aa8.66□□□□□ -1.02
SHE2YKL130C RPL17AP05740 184 aaKnown RBP8.59□□□□□ -1.03
SHE2YKL130C REB1P21538 810 aa8.59□□□□□ -1.03
SHE2YKL130C RPL17BP46990 184 aaKnown RBP8.59□□□□□ -1.03
SHE2YKL130C YGL015CP33199 130 aa8.49□□□□□ -1.05
SHE2YKL130C BFR2Q06631 534 aaKnown RBP8.48□□□□□ -1.05
SHE2YKL130C CDC27P38042 758 aa8.27□□□□□ -1.09
SHE2YKL130C SPT21P35209 758 aa8.17□□□□□ -1.1
SHE2YKL130C YKR023WP36119 530 aaKnown RBP8.16□□□□□ -1.1
SHE2YKL130C UBP10P53874 792 aaPredicted RBP8.08□□□□□ -1.12
SHE2YKL130C MAP2P38174 421 aaKnown RBP8.04□□□□□ -1.12
SHE2YKL130C HOP09932 586 aa7.98□□□□□ -1.13
SHE2YKL130C BUD31P25337 157 aaPredicted RBP7.98□□□□□ -1.13
SHE2YKL130C TFC8Q12308 588 aa7.98□□□□□ -1.13
SHE2YKL130C DCD1P06773 312 aa7.95□□□□□ -1.14
SHE2YKL130C RIM101P33400 625 aa7.82□□□□□ -1.16
SHE2YKL130C SCY1P53009 804 aa7.79□□□□□ -1.16
SHE2YKL130C SLX5P32828 619 aaKnown RBP7.72□□□□□ -1.17
SHE2YKL130C TGL3P40308 642 aa7.72□□□□□ -1.17
SHE2YKL130C TIF4632P39936 914 aaKnown RBP7.71□□□□□ -1.18
SHE2YKL130C BCH2P36122 765 aa7.7□□□□□ -1.18
SHE2YKL130C UBP9P39967 754 aa7.57□□□□□ -1.2
SHE2YKL130C OXP1P28273 1286 aa7.55□□□□□ -1.2
SHE2YKL130C YIL055CP40523 627 aaKnown RBP7.52□□□□□ -1.21
SHE2YKL130C SIS1P25294 352 aaKnown RBP7.51□□□□□ -1.21
SHE2YKL130C PTP3P40048 928 aa7.51□□□□□ -1.21
SHE2YKL130C EPS1P40557 701 aa7.49□□□□□ -1.21
SHE2YKL130C BDF1P35817 686 aa7.46□□□□□ -1.22
SHE2YKL130C MST1P07236 462 aa7.39□□□□□ -1.23
SHE2YKL130C YAH1Q12184 172 aaKnown RBP7.37□□□□□ -1.23
SHE2YKL130C BBC1P47068 1157 aa7.36□□□□□ -1.23
SHE2YKL130C RSM7P47150 247 aa7.36□□□□□ -1.23
SHE2YKL130C AI2P03876 854 aa7.32□□□□□ -1.24
SHE2YKL130C TFA1P36100 482 aa7.32□□□□□ -1.24
SHE2YKL130C NSR1P27476 414 aaKnown RBP RIP-Chip data7.3□□□□□ -1.24not detected
SHE2YKL130C YOR238WQ08634 303 aa7.29□□□□□ -1.24
SHE2YKL130C YBL029C-AQ3E756 94 aa7.27□□□□□ -1.25
SHE2YKL130C VNX1P42839 908 aa7.21□□□□□ -1.26
SHE2YKL130C YAP5P40574 245 aa7.19□□□□□ -1.26
SHE2YKL130C YLR271WQ06152 274 aa7.18□□□□□ -1.26
SHE2YKL130C WSC3Q12215 556 aa7.12□□□□□ -1.27
SHE2YKL130C SPP1Q03012 353 aa7.1□□□□□ -1.27
SHE2YKL130C GTT3P39996 337 aa7.08□□□□□ -1.28
SHE2YKL130C PSD2P53037 1138 aaKnown RBP7.08□□□□□ -1.28
SHE2YKL130C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.07□□□□□ -1.28not detected
SHE2YKL130C SSP1P38871 571 aa7.06□□□□□ -1.28
SHE2YKL130C MRM1P25270 412 aa7.05□□□□□ -1.28
SHE2YKL130C TIF11P38912 153 aaKnown RBP7.04□□□□□ -1.28
SHE2YKL130C AIR2Q12476 344 aaKnown RBP7.03□□□□□ -1.28
SHE2YKL130C FKH1P40466 484 aa7.02□□□□□ -1.29
SHE2YKL130C PIB1Q06651 286 aa7.02□□□□□ -1.29
SHE2YKL130C IOC2Q12072 812 aa6.95□□□□□ -1.3
SHE2YKL130C CST9Q06032 482 aa6.93□□□□□ -1.3
SHE2YKL130C ULI1P43604 169 aa6.92□□□□□ -1.3
SHE2YKL130C YJL171CP46992 396 aa6.92□□□□□ -1.3
SHE2YKL130C LDB19Q12502 818 aa6.92□□□□□ -1.3
SHE2YKL130C MGA2P40578 1113 aa6.91□□□□□ -1.3
SHE2YKL130C RTG3P38165 486 aa6.88□□□□□ -1.31
SHE2YKL130C YMR1P47147 688 aaKnown RBP RIP-Chip data6.88□□□□□ -1.31not detected
SHE2YKL130C MSB4Q12317 492 aa6.88□□□□□ -1.31
SHE2YKL130C DBP1P24784 617 aaKnown RBP6.87□□□□□ -1.31
SHE2YKL130C VPS29P38759 282 aa6.86□□□□□ -1.31
SHE2YKL130C YFR006WP43590 535 aa6.86□□□□□ -1.31
SHE2YKL130C EAP1P36041 632 aaKnown RBP6.83□□□□□ -1.32
SHE2YKL130C SET4P42948 560 aa6.83□□□□□ -1.32
SHE2YKL130C YOL036WQ08206 761 aa6.83□□□□□ -1.32
SHE2YKL130C BMT6Q12291 365 aa6.82□□□□□ -1.32
SHE2YKL130C STS1P38637 319 aa6.8□□□□□ -1.32
SHE2YKL130C TRP5P00931 707 aaKnown RBP6.78□□□□□ -1.32
SHE2YKL130C VMA1P17255 1071 aaKnown RBP6.78□□□□□ -1.32
SHE2YKL130C RTG1P32607 177 aa6.77□□□□□ -1.33
SHE2YKL130C RCR1P38212 213 aa6.77□□□□□ -1.33
SHE2YKL130C SAM3Q08986 587 aa6.77□□□□□ -1.33
SHE2YKL130C YNL035CP53962 389 aaKnown RBP6.73□□□□□ -1.33
SHE2YKL130C NCR1Q12200 1170 aa6.73□□□□□ -1.33
SHE2YKL130C SEC61P32915 480 aa6.71□□□□□ -1.34
SHE2YKL130C GYP5Q12344 894 aa6.67□□□□□ -1.34
SHE2YKL130C TFG1P41895 735 aaPredicted RBP6.66□□□□□ -1.34
SHE2YKL130C DAN4P47179 1161 aa6.65□□□□□ -1.34
SHE2YKL130C ABP1P15891 592 aaKnown RBP6.64□□□□□ -1.35
SHE2YKL130C HTA1P04911 132 aaKnown RBP6.63□□□□□ -1.35
SHE2YKL130C HTA2P04912 132 aa6.63□□□□□ -1.35
SHE2YKL130C DCW1P36091 449 aa6.62□□□□□ -1.35
SHE2YKL130C JIP4Q03361 876 aa6.62□□□□□ -1.35
SHE2YKL130C SAP30P38429 201 aa6.58□□□□□ -1.36
SHE2YKL130C YEL023CP39992 682 aa6.57□□□□□ -1.36
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms