RNA–Protein interactions for RNA: snR56

snR56, Transcript of C/D box small nucleolar RNA (snoRNA), yeastyeast

Gene snR56, Length 88 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR56snR56 MTC1P47018 478 aaKnown RBP17.83■□□□□ 0.44
snR56snR56 FAP1P53971 965 aa16.6■□□□□ 0.25
snR56snR56 DRS1P32892 752 aaKnown RBP16.08■□□□□ 0.16
snR56snR56 PRY3P47033 881 aa15.64■□□□□ 0.09
snR56snR56 PRI1P10363 409 aa15.36■□□□□ 0.05
snR56snR56 AAD16Q02895 342 aa15.32■□□□□ 0.04
snR56snR56 ISW2Q08773 1120 aa14.88□□□□□ -0.03
snR56snR56 YCK3P39962 524 aa14.83□□□□□ -0.04
snR56snR56 RPG1P38249 964 aaKnown RBP14.75□□□□□ -0.05
snR56snR56 HAA1Q12753 694 aaKnown RBP14.68□□□□□ -0.06
snR56snR56 TSR3Q12094 313 aaKnown RBP14.46□□□□□ -0.09
snR56snR56 DIP2Q12220 943 aaPredicted RBP14.32□□□□□ -0.12
snR56snR56 RSE1Q04693 1361 aaKnown RBP13.98□□□□□ -0.17
snR56snR56 MRPL32P25348 183 aa13.89□□□□□ -0.19
snR56snR56 AVT3P36062 692 aa13.68□□□□□ -0.22
snR56snR56 RPL17AP05740 184 aaKnown RBP13.57□□□□□ -0.24
snR56snR56 RPL17BP46990 184 aaKnown RBP13.57□□□□□ -0.24
snR56snR56 REB1P21538 810 aa13.54□□□□□ -0.24
snR56snR56 YGL015CP33199 130 aa13.49□□□□□ -0.25
snR56snR56 CDC27P38042 758 aa13.13□□□□□ -0.31
snR56snR56 BFR2Q06631 534 aaKnown RBP13.1□□□□□ -0.31
snR56snR56 SPT21P35209 758 aa13□□□□□ -0.33
snR56snR56 YKR023WP36119 530 aaKnown RBP12.97□□□□□ -0.33
snR56snR56 UBP10P53874 792 aaPredicted RBP12.82□□□□□ -0.36
snR56snR56 MAP2P38174 421 aaKnown RBP12.77□□□□□ -0.37
snR56snR56 TFC8Q12308 588 aa12.7□□□□□ -0.38
snR56snR56 HOP09932 586 aa12.67□□□□□ -0.38
snR56snR56 DCD1P06773 312 aa12.63□□□□□ -0.39
snR56snR56 BUD31P25337 157 aaPredicted RBP12.62□□□□□ -0.39
snR56snR56 RIM101P33400 625 aa12.42□□□□□ -0.42
snR56snR56 SCY1P53009 804 aa12.41□□□□□ -0.42
snR56snR56 SLX5P32828 619 aaKnown RBP12.28□□□□□ -0.44
snR56snR56 TIF4632P39936 914 aaKnown RBP12.27□□□□□ -0.45
snR56snR56 TGL3P40308 642 aa12.27□□□□□ -0.45
snR56snR56 BCH2P36122 765 aa12.26□□□□□ -0.45
snR56snR56 UBP9P39967 754 aa12.02□□□□□ -0.49
snR56snR56 OXP1P28273 1286 aa11.99□□□□□ -0.49
snR56snR56 SIS1P25294 352 aaKnown RBP11.92□□□□□ -0.5
snR56snR56 EPS1P40557 701 aa11.91□□□□□ -0.5
snR56snR56 BDF1P35817 686 aa11.88□□□□□ -0.51
snR56snR56 PTP3P40048 928 aa11.76□□□□□ -0.53
snR56snR56 YIL055CP40523 627 aaKnown RBP11.76□□□□□ -0.53
snR56snR56 MST1P07236 462 aa11.72□□□□□ -0.53
snR56snR56 RSM7P47150 247 aa11.62□□□□□ -0.55
snR56snR56 YOR238WQ08634 303 aa11.61□□□□□ -0.55
snR56snR56 NSR1P27476 414 aaKnown RBP RIP-Chip data11.59□□□□□ -0.55not detected
snR56snR56 BBC1P47068 1157 aa11.58□□□□□ -0.56
snR56snR56 YBL029C-AQ3E756 94 aa11.56□□□□□ -0.56
snR56snR56 AI2P03876 854 aa11.55□□□□□ -0.56
snR56snR56 YAH1Q12184 172 aaKnown RBP11.49□□□□□ -0.57
snR56snR56 YAP5P40574 245 aa11.46□□□□□ -0.57
snR56snR56 VNX1P42839 908 aa11.44□□□□□ -0.58
snR56snR56 YLR271WQ06152 274 aa11.34□□□□□ -0.59
snR56snR56 TFA1P36100 482 aa11.32□□□□□ -0.6
snR56snR56 SPP1Q03012 353 aa11.31□□□□□ -0.6
snR56snR56 WSC3Q12215 556 aa11.29□□□□□ -0.6
snR56snR56 PSD2P53037 1138 aaKnown RBP11.25□□□□□ -0.61
snR56snR56 TIF11P38912 153 aaKnown RBP11.19□□□□□ -0.62
snR56snR56 GTT3P39996 337 aa11.18□□□□□ -0.62
snR56snR56 AIR2Q12476 344 aaKnown RBP11.15□□□□□ -0.62
snR56snR56 FKH1P40466 484 aa11.12□□□□□ -0.63
snR56snR56 MRM1P25270 412 aa11.1□□□□□ -0.63
snR56snR56 PIB1Q06651 286 aa11.09□□□□□ -0.63
snR56snR56 SSP1P38871 571 aa11.03□□□□□ -0.64
snR56snR56 ULI1P43604 169 aa11.02□□□□□ -0.65
snR56snR56 IOC2Q12072 812 aa11.02□□□□□ -0.65
snR56snR56 YJL171CP46992 396 aa11.01□□□□□ -0.65
snR56snR56 ARP8Q12386 881 aaKnown RBP RIP-Chip data11.01□□□□□ -0.65not detected
snR56snR56 LDB19Q12502 818 aa11□□□□□ -0.65
snR56snR56 MSB4Q12317 492 aa10.94□□□□□ -0.66
snR56snR56 VPS29P38759 282 aa10.9□□□□□ -0.66
snR56snR56 YMR1P47147 688 aaKnown RBP RIP-Chip data10.9□□□□□ -0.66not detected
snR56snR56 CST9Q06032 482 aa10.9□□□□□ -0.66
snR56snR56 EAP1P36041 632 aaKnown RBP10.88□□□□□ -0.67
snR56snR56 DBP1P24784 617 aaKnown RBP10.86□□□□□ -0.67
snR56snR56 YOL036WQ08206 761 aa10.86□□□□□ -0.67
snR56snR56 BMT6Q12291 365 aa10.86□□□□□ -0.67
snR56snR56 MGA2P40578 1113 aa10.85□□□□□ -0.67
snR56snR56 SET4P42948 560 aa10.84□□□□□ -0.67
snR56snR56 RTG3P38165 486 aa10.83□□□□□ -0.68
snR56snR56 TRP5P00931 707 aaKnown RBP10.8□□□□□ -0.68
snR56snR56 STS1P38637 319 aa10.8□□□□□ -0.68
snR56snR56 YFR006WP43590 535 aa10.8□□□□□ -0.68
snR56snR56 VMA1P17255 1071 aaKnown RBP10.78□□□□□ -0.68
snR56snR56 RTG1P32607 177 aa10.78□□□□□ -0.68
snR56snR56 SAM3Q08986 587 aa10.76□□□□□ -0.69
snR56snR56 NCR1Q12200 1170 aa10.72□□□□□ -0.69
snR56snR56 YNL035CP53962 389 aaKnown RBP10.71□□□□□ -0.69
snR56snR56 RCR1P38212 213 aa10.7□□□□□ -0.7
snR56snR56 SEC61P32915 480 aa10.68□□□□□ -0.7
snR56snR56 DAN4P47179 1161 aa10.58□□□□□ -0.72
snR56snR56 ABP1P15891 592 aaKnown RBP10.55□□□□□ -0.72
snR56snR56 GYP5Q12344 894 aa10.55□□□□□ -0.72
snR56snR56 JIP4Q03361 876 aa10.54□□□□□ -0.72
snR56snR56 TFG1P41895 735 aaPredicted RBP10.52□□□□□ -0.73
snR56snR56 HTA1P04911 132 aaKnown RBP10.47□□□□□ -0.73
snR56snR56 HTA2P04912 132 aa10.47□□□□□ -0.73
snR56snR56 SAP30P38429 201 aa10.47□□□□□ -0.73
snR56snR56 DCW1P36091 449 aa10.46□□□□□ -0.73
snR56snR56 YDL129WQ07555 291 aa10.44□□□□□ -0.74
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms