Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
COL20A1Q9P218 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
COL20A1Q9P218 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.16■■■□□ 2.42
COL20A1Q9P218 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
COL20A1Q9P218 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
COL20A1Q9P218 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
COL20A1Q9P218 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.15■■■□□ 2.42
COL20A1Q9P218 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL20A1Q9P218 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL20A1Q9P218 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
COL20A1Q9P218 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
COL20A1Q9P218 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
COL20A1Q9P218 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
COL20A1Q9P218 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.13■■■□□ 2.41
COL20A1Q9P218 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
COL20A1Q9P218 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
COL20A1Q9P218 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
COL20A1Q9P218 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC30.11■■■□□ 2.41
COL20A1Q9P218 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
COL20A1Q9P218 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
COL20A1Q9P218 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.11■■■□□ 2.41
COL20A1Q9P218 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.1■■■□□ 2.41
COL20A1Q9P218 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.1■■■□□ 2.41
COL20A1Q9P218 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC30.09■■■□□ 2.41
COL20A1Q9P218 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
COL20A1Q9P218 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.09■■■□□ 2.41
COL20A1Q9P218 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
COL20A1Q9P218 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
COL20A1Q9P218 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
COL20A1Q9P218 AC010864.1-201ENST00000609407 1511 ntBASIC30.06■■■□□ 2.4
COL20A1Q9P218 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL20A1Q9P218 HLA-V-202ENST00000446817 847 ntBASIC30.05■■■□□ 2.4
COL20A1Q9P218 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.05■■■□□ 2.4
COL20A1Q9P218 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.04■■■□□ 2.4
COL20A1Q9P218 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.04■■■□□ 2.4
COL20A1Q9P218 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL20A1Q9P218 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
COL20A1Q9P218 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30■■■□□ 2.39
COL20A1Q9P218 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC29.99■■■□□ 2.39
COL20A1Q9P218 RPS2-202ENST00000526522 924 ntTSL 2 BASIC29.99■■■□□ 2.39
COL20A1Q9P218 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL20A1Q9P218 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL20A1Q9P218 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.99■■■□□ 2.39
COL20A1Q9P218 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL20A1Q9P218 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL20A1Q9P218 LINC01971-201ENST00000617888 1048 ntBASIC29.97■■■□□ 2.39
COL20A1Q9P218 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL20A1Q9P218 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL20A1Q9P218 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC29.96■■■□□ 2.39
COL20A1Q9P218 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.96■■■□□ 2.39
COL20A1Q9P218 EI24-212ENST00000615917 1407 ntTSL 2 BASIC29.96■■■□□ 2.39
COL20A1Q9P218 DUX4L11-201ENST00000611504 1267 ntBASIC29.95■■■□□ 2.39
COL20A1Q9P218 DUX4L12-201ENST00000614593 1267 ntBASIC29.95■■■□□ 2.39
COL20A1Q9P218 DUX4L14-201ENST00000621227 1267 ntBASIC29.95■■■□□ 2.39
COL20A1Q9P218 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.94■■■□□ 2.38
COL20A1Q9P218 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.93■■■□□ 2.38
COL20A1Q9P218 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC29.93■■■□□ 2.38
COL20A1Q9P218 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
COL20A1Q9P218 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC29.91■■■□□ 2.38
COL20A1Q9P218 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
COL20A1Q9P218 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.91■■■□□ 2.38
COL20A1Q9P218 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL20A1Q9P218 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.9■■■□□ 2.38
COL20A1Q9P218 MIR3648-2-201ENST00000581792 180 ntBASIC29.9■■■□□ 2.38
COL20A1Q9P218 MIR3648-1-201ENST00000615959 180 ntBASIC29.9■■■□□ 2.38
COL20A1Q9P218 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
COL20A1Q9P218 AL135925.1-201ENST00000605920 1701 ntBASIC29.9■■■□□ 2.38
COL20A1Q9P218 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC29.9■■■□□ 2.38
COL20A1Q9P218 CR559946.2-201ENST00000623684 991 ntBASIC29.89■■■□□ 2.38
COL20A1Q9P218 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC29.88■■■□□ 2.37
COL20A1Q9P218 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.88■■■□□ 2.37
COL20A1Q9P218 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.87■■■□□ 2.37
COL20A1Q9P218 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.87■■■□□ 2.37
COL20A1Q9P218 AC016575.1-201ENST00000607026 382 ntBASIC29.86■■■□□ 2.37
COL20A1Q9P218 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
COL20A1Q9P218 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.84■■■□□ 2.37
COL20A1Q9P218 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
COL20A1Q9P218 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC29.83■■■□□ 2.37
COL20A1Q9P218 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
COL20A1Q9P218 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.83■■■□□ 2.37
COL20A1Q9P218 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL20A1Q9P218 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL20A1Q9P218 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL20A1Q9P218 MIR639-201ENST00000384974 98 ntBASIC29.81■■■□□ 2.36
COL20A1Q9P218 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL20A1Q9P218 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.8■■■□□ 2.36
COL20A1Q9P218 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.8■■■□□ 2.36
COL20A1Q9P218 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC29.8■■■□□ 2.36
COL20A1Q9P218 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.79■■■□□ 2.36
COL20A1Q9P218 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL20A1Q9P218 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL20A1Q9P218 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.78■■■□□ 2.36
COL20A1Q9P218 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL20A1Q9P218 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL20A1Q9P218 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
COL20A1Q9P218 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL20A1Q9P218 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL20A1Q9P218 LINC00273-201ENST00000539813 1452 ntBASIC29.77■■■□□ 2.36
COL20A1Q9P218 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL20A1Q9P218 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.77■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms