Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC26.69■■□□□ 1.86
HMGB4Q8WW32 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.68■■□□□ 1.86
HMGB4Q8WW32 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
HMGB4Q8WW32 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB4Q8WW32 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
HMGB4Q8WW32 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
HMGB4Q8WW32 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB4Q8WW32 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.66■■□□□ 1.86
HMGB4Q8WW32 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC26.66■■□□□ 1.86
HMGB4Q8WW32 HSD17B1P1-201ENST00000590052 955 ntBASIC26.66■■□□□ 1.86
HMGB4Q8WW32 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
HMGB4Q8WW32 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
HMGB4Q8WW32 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
HMGB4Q8WW32 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
HMGB4Q8WW32 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.64■■□□□ 1.86
HMGB4Q8WW32 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.64■■□□□ 1.85
HMGB4Q8WW32 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
HMGB4Q8WW32 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB4Q8WW32 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB4Q8WW32 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
HMGB4Q8WW32 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
HMGB4Q8WW32 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
HMGB4Q8WW32 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L13-201ENST00000554103 1267 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L15-201ENST00000611059 1267 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L23-201ENST00000615195 1269 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L24-201ENST00000617576 1269 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L22-201ENST00000618238 1269 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L20-201ENST00000619712 1269 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L21-201ENST00000622058 1269 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L10-201ENST00000622460 1267 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 DUX4L25-201ENST00000624915 1269 ntBASIC26.6■■□□□ 1.85
HMGB4Q8WW32 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB4Q8WW32 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC26.58■■□□□ 1.85
HMGB4Q8WW32 METRNL-202ENST00000570778 967 ntTSL 5 BASIC26.58■■□□□ 1.85
HMGB4Q8WW32 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB4Q8WW32 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HMGB4Q8WW32 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
HMGB4Q8WW32 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.57■■□□□ 1.84
HMGB4Q8WW32 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.57■■□□□ 1.84
HMGB4Q8WW32 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGB4Q8WW32 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.56■■□□□ 1.84
HMGB4Q8WW32 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HMGB4Q8WW32 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.55■■□□□ 1.84
HMGB4Q8WW32 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
HMGB4Q8WW32 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HMGB4Q8WW32 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.54■■□□□ 1.84
HMGB4Q8WW32 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.54■■□□□ 1.84
HMGB4Q8WW32 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGB4Q8WW32 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB4Q8WW32 AL161658.1-201ENST00000623641 1967 ntBASIC26.53■■□□□ 1.84
HMGB4Q8WW32 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
HMGB4Q8WW32 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.51■■□□□ 1.84
HMGB4Q8WW32 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGB4Q8WW32 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
HMGB4Q8WW32 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.51■■□□□ 1.83
HMGB4Q8WW32 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
HMGB4Q8WW32 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HMGB4Q8WW32 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC26.49■■□□□ 1.83
HMGB4Q8WW32 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
HMGB4Q8WW32 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC26.49■■□□□ 1.83
HMGB4Q8WW32 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HMGB4Q8WW32 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
HMGB4Q8WW32 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
HMGB4Q8WW32 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
HMGB4Q8WW32 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
HMGB4Q8WW32 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
HMGB4Q8WW32 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC26.46■■□□□ 1.83
HMGB4Q8WW32 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
HMGB4Q8WW32 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
HMGB4Q8WW32 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.43■■□□□ 1.82
HMGB4Q8WW32 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
HMGB4Q8WW32 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC26.43■■□□□ 1.82
HMGB4Q8WW32 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
HMGB4Q8WW32 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC26.42■■□□□ 1.82
HMGB4Q8WW32 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
HMGB4Q8WW32 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.41■■□□□ 1.82
HMGB4Q8WW32 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.4■■□□□ 1.82
HMGB4Q8WW32 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
HMGB4Q8WW32 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.4■■□□□ 1.82
HMGB4Q8WW32 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
HMGB4Q8WW32 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.4■■□□□ 1.82
HMGB4Q8WW32 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.4■■□□□ 1.82
HMGB4Q8WW32 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC26.39■■□□□ 1.82
HMGB4Q8WW32 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC26.38■■□□□ 1.81
HMGB4Q8WW32 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
HMGB4Q8WW32 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.37■■□□□ 1.81
HMGB4Q8WW32 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGB4Q8WW32 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HMGB4Q8WW32 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC26.36■■□□□ 1.81
HMGB4Q8WW32 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC26.36■■□□□ 1.81
HMGB4Q8WW32 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC26.36■■□□□ 1.81
HMGB4Q8WW32 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HMGB4Q8WW32 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms