Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 HLA-B-256ENST00000639848 1089 ntBASIC17.78■□□□□ 0.44
ABCA4P78363 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
ABCA4P78363 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ABCA4P78363 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.78■□□□□ 0.44
ABCA4P78363 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.78■□□□□ 0.44
ABCA4P78363 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 FAM99A-202ENST00000538190 1989 ntBASIC17.78■□□□□ 0.44
ABCA4P78363 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.78■□□□□ 0.44
ABCA4P78363 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.78■□□□□ 0.44
ABCA4P78363 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC17.78■□□□□ 0.44
ABCA4P78363 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
ABCA4P78363 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ABCA4P78363 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.77■□□□□ 0.44
ABCA4P78363 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.77■□□□□ 0.44
ABCA4P78363 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.77■□□□□ 0.44
ABCA4P78363 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.77■□□□□ 0.44
ABCA4P78363 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 SOX15-203ENST00000570788 1093 ntBASIC17.77■□□□□ 0.44
ABCA4P78363 MTDHP1-201ENST00000605323 784 ntBASIC17.77■□□□□ 0.44
ABCA4P78363 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC17.77■□□□□ 0.44
ABCA4P78363 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ABCA4P78363 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ABCA4P78363 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.77■□□□□ 0.44
ABCA4P78363 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.77■□□□□ 0.43
ABCA4P78363 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.77■□□□□ 0.43
ABCA4P78363 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
ABCA4P78363 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
ABCA4P78363 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.76■□□□□ 0.43
ABCA4P78363 AC127496.7-201ENST00000625110 1798 ntBASIC17.76■□□□□ 0.43
ABCA4P78363 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.76■□□□□ 0.43
ABCA4P78363 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
ABCA4P78363 BX088651.1-201ENST00000540551 451 ntBASIC17.76■□□□□ 0.43
ABCA4P78363 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
ABCA4P78363 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ABCA4P78363 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
ABCA4P78363 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC17.76■□□□□ 0.43
ABCA4P78363 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.76■□□□□ 0.43
ABCA4P78363 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ABCA4P78363 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ABCA4P78363 AL445228.2-201ENST00000605589 952 ntBASIC17.75■□□□□ 0.43
ABCA4P78363 FAM197Y4-202ENST00000622692 608 ntBASIC17.75■□□□□ 0.43
ABCA4P78363 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.75■□□□□ 0.43
ABCA4P78363 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.75■□□□□ 0.43
ABCA4P78363 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC17.75■□□□□ 0.43
ABCA4P78363 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.75■□□□□ 0.43
ABCA4P78363 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
ABCA4P78363 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ABCA4P78363 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.74■□□□□ 0.43
ABCA4P78363 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.74■□□□□ 0.43
ABCA4P78363 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.74■□□□□ 0.43
ABCA4P78363 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.74■□□□□ 0.43
ABCA4P78363 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ABCA4P78363 AC092368.3-202ENST00000574180 1591 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms