RNA–Protein interactions for RNA: ENST00000533341.2

GRAMD1B-209, Transcript of GRAM domain containing 1B, humanhuman

TSL 2 BASIC

Gene GRAMD1B, Length 707 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD1B-209ENST00000533341 NISCHQ9Y2I1 1504 aa48.83■■■■■ 5.41
GRAMD1B-209ENST00000533341 CCDC180Q9P1Z9 1646 aa43.73■■■■■ 4.59
GRAMD1B-209ENST00000533341 ABCC9O60706 1549 aa43.57■■■■■ 4.56
GRAMD1B-209ENST00000533341 RB1CC1Q8TDY2 1594 aa41.56■■■■■ 4.24
GRAMD1B-209ENST00000533341 DCAF8L2P0C7V8 631 aa41.34■■■■■ 4.21
GRAMD1B-209ENST00000533341 NACADO15069 1562 aa41.29■■■■■ 4.2
GRAMD1B-209ENST00000533341 MYO15BQ96JP2 1530 aa40.73■■■■■ 4.11
GRAMD1B-209ENST00000533341 PABPN1Q86U42 306 aaKnown RBP eCLIP40.63■■■■■ 4.09
GRAMD1B-209ENST00000533341 UNC13AQ9UPW8 1703 aa40.6■■■■■ 4.09
GRAMD1B-209ENST00000533341 DNAJC5BQ9UF47 199 aa40.6■■■■■ 4.09
GRAMD1B-209ENST00000533341 ZCCHC6Q5VYS8 1495 aaKnown RBP40.5■■■■■ 4.07
GRAMD1B-209ENST00000533341 DCAF1Q9Y4B6 1507 aa40.31■■■■■ 4.04
GRAMD1B-209ENST00000533341 BICRAQ9NZM4 1560 aa40.25■■■■■ 4.03
GRAMD1B-209ENST00000533341 SCRIBQ14160 1630 aa39.92■■■■□ 3.98
GRAMD1B-209ENST00000533341 SHROOM4Q9ULL8 1493 aa39.74■■■■□ 3.95
GRAMD1B-209ENST00000533341 CC2D2AQ9P2K1 1620 aa39.34■■■■□ 3.89
GRAMD1B-209ENST00000533341 EIF4G1Q04637 1599 aaKnown RBP39.29■■■■□ 3.88
GRAMD1B-209ENST00000533341 CECR2Q9BXF3 1484 aa39.21■■■■□ 3.87
GRAMD1B-209ENST00000533341 NCAPD3P42695 1498 aa38.09■■■■□ 3.69
GRAMD1B-209ENST00000533341 SMARCA4P51532 1647 aa38.06■■■■□ 3.68
GRAMD1B-209ENST00000533341 ATAD2BQ9ULI0 1458 aa38.03■■■■□ 3.68
GRAMD1B-209ENST00000533341 SMARCA2P51531 1590 aa37.97■■■■□ 3.67
GRAMD1B-209ENST00000533341 BAZ1AQ9NRL2 1556 aaPredicted RBP37.92■■■■□ 3.66
GRAMD1B-209ENST00000533341 HMGXB3Q12766 1538 aa37.83■■■■□ 3.65
GRAMD1B-209ENST00000533341 BAZ1BQ9UIG0 1483 aaKnown RBP37.72■■■■□ 3.63
GRAMD1B-209ENST00000533341 ERCC6Q03468 1493 aa37.65■■■■□ 3.62
GRAMD1B-209ENST00000533341 MROH2BQ7Z745 1585 aa37.63■■■■□ 3.62
GRAMD1B-209ENST00000533341 PEG3Q9GZU2 1588 aa37.63■■■■□ 3.61
GRAMD1B-209ENST00000533341 NESP48681 1621 aa37.46■■■■□ 3.59
GRAMD1B-209ENST00000533341 CUX2O14529 1486 aa37.41■■■■□ 3.58
GRAMD1B-209ENST00000533341 LAMC3Q9Y6N6 1575 aa37.24■■■■□ 3.55
GRAMD1B-209ENST00000533341 WIZO95785 1651 aa37.23■■■■□ 3.55
GRAMD1B-209ENST00000533341 DNAJC5Q9H3Z4 198 aa37.15■■■■□ 3.54
GRAMD1B-209ENST00000533341 PDS5BQ9NTI5 1447 aa37.05■■■■□ 3.52
GRAMD1B-209ENST00000533341 KIF21AQ7Z4S6 1674 aa37.01■■■■□ 3.52
GRAMD1B-209ENST00000533341 THOC2Q8NI27 1593 aaKnown RBP37■■■■□ 3.51
GRAMD1B-209ENST00000533341 CADPSQ9ULU8 1353 aa36.99■■■■□ 3.51
GRAMD1B-209ENST00000533341 RSF1Q96T23 1441 aaPredicted RBP36.93■■■■□ 3.5
GRAMD1B-209ENST00000533341 TOP2AP11388 1531 aaKnown RBP36.75■■■■□ 3.47
GRAMD1B-209ENST00000533341 MRC2Q9UBG0 1479 aa36.69■■■■□ 3.46
GRAMD1B-209ENST00000533341 CEP164Q9UPV0 1460 aa36.61■■■■□ 3.45
GRAMD1B-209ENST00000533341 CFTRP13569 1480 aa36.57■■■■□ 3.45
GRAMD1B-209ENST00000533341 FANCD2Q9BXW9 1451 aa36.57■■■■□ 3.45
GRAMD1B-209ENST00000533341 WDR62O43379 1518 aa36.55■■■■□ 3.44
GRAMD1B-209ENST00000533341 CCDC88BA6NC98 1476 aa36.34■■■■□ 3.41
GRAMD1B-209ENST00000533341 PRDM2Q13029 1718 aa36.29■■■■□ 3.4
GRAMD1B-209ENST00000533341 URB2Q14146 1524 aaKnown RBP36.23■■■■□ 3.39
GRAMD1B-209ENST00000533341 TOPBP1Q92547 1522 aa35.9■■■■□ 3.34
GRAMD1B-209ENST00000533341 ABCC8Q09428 1581 aa35.87■■■■□ 3.33
GRAMD1B-209ENST00000533341 IFT140Q96RY7 1462 aa35.86■■■■□ 3.33
GRAMD1B-209ENST00000533341 OSCARQ8IYS5 282 aa35.83■■■■□ 3.33
GRAMD1B-209ENST00000533341 DNMBPQ6XZF7 1577 aa35.79■■■■□ 3.32
GRAMD1B-209ENST00000533341 ZNF608Q9ULD9 1512 aaPredicted RBP35.75■■■■□ 3.31
GRAMD1B-209ENST00000533341 TRIM41Q8WV44 630 aa35.74■■■■□ 3.31
GRAMD1B-209ENST00000533341 SUPT5HO00267 1087 aaKnown RBP35.63■■■■□ 3.29
GRAMD1B-209ENST00000533341 EIF4G3O43432 1585 aaKnown RBP35.59■■■■□ 3.29
GRAMD1B-209ENST00000533341 TARBP1Q13395 1621 aaKnown RBP35.53■■■■□ 3.28
GRAMD1B-209ENST00000533341 POLA1P09884 1462 aaPredicted RBP35.53■■■■□ 3.28
GRAMD1B-209ENST00000533341 AQRO60306 1485 aaKnown RBP eCLIP35.49■■■■□ 3.27
GRAMD1B-209ENST00000533341 RAD54L2Q9Y4B4 1467 aa35.43■■■■□ 3.26
GRAMD1B-209ENST00000533341 SOGA1O94964 1423 aa35.43■■■■□ 3.26
GRAMD1B-209ENST00000533341 FGD5Q6ZNL6 1462 aa35.37■■■■□ 3.25
GRAMD1B-209ENST00000533341 CUX1P39880 1505 aa35.34■■■■□ 3.25
GRAMD1B-209ENST00000533341 FBLN2P98095 1184 aa35.34■■■■□ 3.25
GRAMD1B-209ENST00000533341 TDRD9Q8NDG6 1382 aaKnown RBP35.33■■■■□ 3.25
GRAMD1B-209ENST00000533341 CHD1O14646 1710 aa35.32■■■■□ 3.24
GRAMD1B-209ENST00000533341 RIMBP3CA6NJZ7 1639 aa35.28■■■■□ 3.24
GRAMD1B-209ENST00000533341 RIMBP3BA6NNM3 1639 aa35.28■■■■□ 3.24
GRAMD1B-209ENST00000533341 RIMBP3Q9UFD9 1639 aa35.28■■■■□ 3.24
GRAMD1B-209ENST00000533341 WDR97A6NE52 1622 aa35.2■■■■□ 3.23
GRAMD1B-209ENST00000533341 ARHGEF11O15085 1522 aa35.17■■■■□ 3.22
GRAMD1B-209ENST00000533341 SNAPC4Q5SXM2 1469 aa35.14■■■■□ 3.22
GRAMD1B-209ENST00000533341 CHMP7Q8WUX9 453 aaPredicted RBP35.08■■■■□ 3.21
GRAMD1B-209ENST00000533341 GRIN2BQ13224 1484 aa35.07■■■■□ 3.2
GRAMD1B-209ENST00000533341 MAGI1Q96QZ7 1491 aaPredicted RBP35.04■■■■□ 3.2
GRAMD1B-209ENST00000533341 GAPVD1Q14C86 1478 aa34.99■■■■□ 3.19
GRAMD1B-209ENST00000533341 CYB5RLQ6IPT4 315 aa34.99■■■■□ 3.19
GRAMD1B-209ENST00000533341 PBRM1Q86U86 1689 aa34.98■■■■□ 3.19
GRAMD1B-209ENST00000533341 ABCA10Q8WWZ4 1543 aa34.96■■■■□ 3.19
GRAMD1B-209ENST00000533341 SYNJ1O43426 1573 aa34.92■■■■□ 3.18
GRAMD1B-209ENST00000533341 SYNJ2O15056 1496 aa34.92■■■■□ 3.18
GRAMD1B-209ENST00000533341 WRNQ14191 1432 aaPredicted RBP eCLIP34.9■■■■□ 3.18
GRAMD1B-209ENST00000533341 ABCA5Q8WWZ7 1642 aa34.87■■■■□ 3.17
GRAMD1B-209ENST00000533341 TOP2BQ02880 1626 aa34.85■■■■□ 3.17
GRAMD1B-209ENST00000533341 BIVM-ERCC5R4GMW8 1640 aa34.85■■■■□ 3.17
GRAMD1B-209ENST00000533341 CLASP1Q7Z460 1538 aa34.84■■■■□ 3.17
GRAMD1B-209ENST00000533341 ARAP1Q96P48 1450 aa34.83■■■■□ 3.17
GRAMD1B-209ENST00000533341 ADAMTS12P58397 1594 aa34.62■■■■□ 3.13
GRAMD1B-209ENST00000533341 GRIN2AQ12879 1464 aa34.61■■■■□ 3.13
GRAMD1B-209ENST00000533341 TRHP20396 242 aaPredicted RBP34.6■■■■□ 3.13
GRAMD1B-209ENST00000533341 FHAD1B1AJZ9 1412 aa34.55■■■■□ 3.12
GRAMD1B-209ENST00000533341 ERICH3Q5RHP9 1530 aa34.53■■■■□ 3.12
GRAMD1B-209ENST00000533341 CEP170Q5SW79 1584 aa34.46■■■■□ 3.11
GRAMD1B-209ENST00000533341 NUP160Q12769 1436 aa34.45■■■■□ 3.11
GRAMD1B-209ENST00000533341 ERCC6L2Q5T890 1561 aa34.33■■■■□ 3.09
GRAMD1B-209ENST00000533341 SHROOM2Q13796 1616 aa34.26■■■■□ 3.08
GRAMD1B-209ENST00000533341 KIF27Q86VH2 1401 aa34.23■■■■□ 3.07
GRAMD1B-209ENST00000533341 JPH4Q96JJ6 628 aa34.19■■■■□ 3.06
GRAMD1B-209ENST00000533341 PRG4Q92954 1404 aaPredicted RBP34.17■■■■□ 3.06
GRAMD1B-209ENST00000533341 IGF1RP08069 1367 aa34.14■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 249.9 ms