RNA–Protein interactions for RNA: ENST00000345519.9

CLTA-202, Transcript of clathrin light chain A, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLTA, Length 1,073 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTA-202ENST00000345519 NISCHQ9Y2I1 1504 aa49.09■■■■■ 5.45
CLTA-202ENST00000345519 CCDC180Q9P1Z9 1646 aa43.95■■■■■ 4.63
CLTA-202ENST00000345519 ABCC9O60706 1549 aa42.74■■■■■ 4.43
CLTA-202ENST00000345519 RB1CC1Q8TDY2 1594 aa41.26■■■■■ 4.2
CLTA-202ENST00000345519 NACADO15069 1562 aa41.2■■■■■ 4.19
CLTA-202ENST00000345519 MYO15BQ96JP2 1530 aa41.02■■■■■ 4.16
CLTA-202ENST00000345519 ZCCHC6Q5VYS8 1495 aaKnown RBP40.91■■■■■ 4.14
CLTA-202ENST00000345519 DCAF1Q9Y4B6 1507 aa40.76■■■■■ 4.12
CLTA-202ENST00000345519 UNC13AQ9UPW8 1703 aa40.57■■■■■ 4.09
CLTA-202ENST00000345519 DCAF8L2P0C7V8 631 aa40.5■■■■■ 4.07
CLTA-202ENST00000345519 BICRAQ9NZM4 1560 aa40.1■■■■■ 4.01
CLTA-202ENST00000345519 SCRIBQ14160 1630 aa39.81■■■■□ 3.96
CLTA-202ENST00000345519 SHROOM4Q9ULL8 1493 aa39.74■■■■□ 3.95
CLTA-202ENST00000345519 PABPN1Q86U42 306 aaKnown RBP eCLIP39.72■■■■□ 3.95
CLTA-202ENST00000345519 DNAJC5BQ9UF47 199 aa39.31■■■■□ 3.88
CLTA-202ENST00000345519 EIF4G1Q04637 1599 aaKnown RBP38.98■■■■□ 3.83
CLTA-202ENST00000345519 CC2D2AQ9P2K1 1620 aa38.85■■■■□ 3.81
CLTA-202ENST00000345519 CECR2Q9BXF3 1484 aa38.47■■■■□ 3.75
CLTA-202ENST00000345519 SMARCA4P51532 1647 aa38.19■■■■□ 3.7
CLTA-202ENST00000345519 BAZ1AQ9NRL2 1556 aaPredicted RBP38.07■■■■□ 3.69
CLTA-202ENST00000345519 NCAPD3P42695 1498 aa37.96■■■■□ 3.67
CLTA-202ENST00000345519 SMARCA2P51531 1590 aa37.93■■■■□ 3.66
CLTA-202ENST00000345519 PEG3Q9GZU2 1588 aa37.93■■■■□ 3.66
CLTA-202ENST00000345519 ATAD2BQ9ULI0 1458 aa37.91■■■■□ 3.66
CLTA-202ENST00000345519 HMGXB3Q12766 1538 aa37.87■■■■□ 3.65
CLTA-202ENST00000345519 MROH2BQ7Z745 1585 aa37.78■■■■□ 3.64
CLTA-202ENST00000345519 BAZ1BQ9UIG0 1483 aaKnown RBP37.55■■■■□ 3.6
CLTA-202ENST00000345519 WIZO95785 1651 aa37.42■■■■□ 3.58
CLTA-202ENST00000345519 RSF1Q96T23 1441 aaPredicted RBP37.23■■■■□ 3.55
CLTA-202ENST00000345519 LAMC3Q9Y6N6 1575 aa37.06■■■■□ 3.52
CLTA-202ENST00000345519 TOP2AP11388 1531 aaKnown RBP37.03■■■■□ 3.52
CLTA-202ENST00000345519 NESP48681 1621 aa36.99■■■■□ 3.51
CLTA-202ENST00000345519 ERCC6Q03468 1493 aa36.82■■■■□ 3.49
CLTA-202ENST00000345519 KIF21AQ7Z4S6 1674 aa36.77■■■■□ 3.48
CLTA-202ENST00000345519 CADPSQ9ULU8 1353 aa36.73■■■■□ 3.47
CLTA-202ENST00000345519 THOC2Q8NI27 1593 aaKnown RBP36.71■■■■□ 3.47
CLTA-202ENST00000345519 CUX2O14529 1486 aa36.7■■■■□ 3.47
CLTA-202ENST00000345519 PDS5BQ9NTI5 1447 aa36.63■■■■□ 3.45
CLTA-202ENST00000345519 PRDM2Q13029 1718 aa36.62■■■■□ 3.45
CLTA-202ENST00000345519 CFTRP13569 1480 aa36.58■■■■□ 3.45
CLTA-202ENST00000345519 CCDC88BA6NC98 1476 aa36.47■■■■□ 3.43
CLTA-202ENST00000345519 WDR62O43379 1518 aa36.34■■■■□ 3.41
CLTA-202ENST00000345519 FANCD2Q9BXW9 1451 aa36.33■■■■□ 3.41
CLTA-202ENST00000345519 MRC2Q9UBG0 1479 aa36.33■■■■□ 3.41
CLTA-202ENST00000345519 CEP164Q9UPV0 1460 aa36.33■■■■□ 3.41
CLTA-202ENST00000345519 URB2Q14146 1524 aaKnown RBP36.03■■■■□ 3.36
CLTA-202ENST00000345519 DNMBPQ6XZF7 1577 aa35.81■■■■□ 3.32
CLTA-202ENST00000345519 ABCC8Q09428 1581 aa35.8■■■■□ 3.32
CLTA-202ENST00000345519 TOPBP1Q92547 1522 aa35.78■■■■□ 3.32
CLTA-202ENST00000345519 SUPT5HO00267 1087 aaKnown RBP35.78■■■■□ 3.32
CLTA-202ENST00000345519 IFT140Q96RY7 1462 aa35.58■■■■□ 3.29
CLTA-202ENST00000345519 DNAJC5Q9H3Z4 198 aa35.57■■■■□ 3.28
CLTA-202ENST00000345519 TARBP1Q13395 1621 aaKnown RBP35.54■■■■□ 3.28
CLTA-202ENST00000345519 CUX1P39880 1505 aa35.47■■■■□ 3.27
CLTA-202ENST00000345519 POLA1P09884 1462 aaPredicted RBP35.47■■■■□ 3.27
CLTA-202ENST00000345519 EIF4G3O43432 1585 aaKnown RBP35.41■■■■□ 3.26
CLTA-202ENST00000345519 ZNF608Q9ULD9 1512 aaPredicted RBP35.4■■■■□ 3.26
CLTA-202ENST00000345519 WDR97A6NE52 1622 aa35.35■■■■□ 3.25
CLTA-202ENST00000345519 FGD5Q6ZNL6 1462 aa35.33■■■■□ 3.25
CLTA-202ENST00000345519 BIVM-ERCC5R4GMW8 1640 aa35.28■■■■□ 3.24
CLTA-202ENST00000345519 RAD54L2Q9Y4B4 1467 aa35.21■■■■□ 3.23
CLTA-202ENST00000345519 TOP2BQ02880 1626 aa35.21■■■■□ 3.23
CLTA-202ENST00000345519 SOGA1O94964 1423 aa35.18■■■■□ 3.22
CLTA-202ENST00000345519 SYNJ1O43426 1573 aa35.13■■■■□ 3.21
CLTA-202ENST00000345519 AQRO60306 1485 aaKnown RBP eCLIP35.09■■■■□ 3.21
CLTA-202ENST00000345519 WRNQ14191 1432 aaPredicted RBP eCLIP35.07■■■■□ 3.21
CLTA-202ENST00000345519 CHD1O14646 1710 aa35.05■■■■□ 3.2
CLTA-202ENST00000345519 ABCA10Q8WWZ4 1543 aa35.05■■■■□ 3.2
CLTA-202ENST00000345519 ABCA5Q8WWZ7 1642 aa35.04■■■■□ 3.2
CLTA-202ENST00000345519 PBRM1Q86U86 1689 aa35.03■■■■□ 3.2
CLTA-202ENST00000345519 TDRD9Q8NDG6 1382 aaKnown RBP34.95■■■■□ 3.19
CLTA-202ENST00000345519 GRIN2BQ13224 1484 aa34.89■■■■□ 3.18
CLTA-202ENST00000345519 MAGI1Q96QZ7 1491 aaPredicted RBP34.89■■■■□ 3.18
CLTA-202ENST00000345519 OSCARQ8IYS5 282 aa34.87■■■■□ 3.17
CLTA-202ENST00000345519 GAPVD1Q14C86 1478 aa34.85■■■■□ 3.17
CLTA-202ENST00000345519 SNAPC4Q5SXM2 1469 aa34.85■■■■□ 3.17
CLTA-202ENST00000345519 SYNJ2O15056 1496 aa34.71■■■■□ 3.15
CLTA-202ENST00000345519 ADAMTS12P58397 1594 aa34.67■■■■□ 3.14
CLTA-202ENST00000345519 ERICH3Q5RHP9 1530 aa34.66■■■■□ 3.14
CLTA-202ENST00000345519 CLASP1Q7Z460 1538 aa34.64■■■■□ 3.14
CLTA-202ENST00000345519 RIMBP3CA6NJZ7 1639 aa34.63■■■■□ 3.13
CLTA-202ENST00000345519 RIMBP3BA6NNM3 1639 aa34.63■■■■□ 3.13
CLTA-202ENST00000345519 RIMBP3Q9UFD9 1639 aa34.63■■■■□ 3.13
CLTA-202ENST00000345519 ARHGEF11O15085 1522 aa34.55■■■■□ 3.12
CLTA-202ENST00000345519 GRIN2AQ12879 1464 aa34.47■■■■□ 3.11
CLTA-202ENST00000345519 FBLN2P98095 1184 aa34.45■■■■□ 3.11
CLTA-202ENST00000345519 FHAD1B1AJZ9 1412 aa34.45■■■■□ 3.11
CLTA-202ENST00000345519 CHMP7Q8WUX9 453 aaPredicted RBP34.44■■■■□ 3.1
CLTA-202ENST00000345519 CUL7Q14999 1698 aa34.38■■■■□ 3.09
CLTA-202ENST00000345519 CEP170Q5SW79 1584 aa34.37■■■■□ 3.09
CLTA-202ENST00000345519 NUP160Q12769 1436 aa34.37■■■■□ 3.09
CLTA-202ENST00000345519 KIF27Q86VH2 1401 aa34.33■■■■□ 3.09
CLTA-202ENST00000345519 SHROOM2Q13796 1616 aa34.28■■■■□ 3.08
CLTA-202ENST00000345519 ARAP1Q96P48 1450 aa34.24■■■■□ 3.07
CLTA-202ENST00000345519 IGF1RP08069 1367 aa34.21■■■■□ 3.07
CLTA-202ENST00000345519 RUSC2Q8N2Y8 1516 aa34.19■■■■□ 3.06
CLTA-202ENST00000345519 TRIM41Q8WV44 630 aa34.09■■■■□ 3.05
CLTA-202ENST00000345519 ERCC6L2Q5T890 1561 aa34.03■■■■□ 3.04
CLTA-202ENST00000345519 CARMIL1Q5VZK9 1371 aa33.96■■■■□ 3.03
CLTA-202ENST00000345519 KIAA0586Q9BVV6 1533 aa33.94■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms