Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC079140.4-201ENST00000507448 529 ntBASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AC004854.2-201ENST00000608450 1441 ntBASIC27.9■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
SENP3-EIF4A1A0A087X0R7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC27.89■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC27.89■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC27.89■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC27.89■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MFF-207ENST00000409565 1548 ntTSL 2 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MAX-217ENST00000557277 728 ntTSL 3 BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 LINC02228-203ENST00000641970 1355 ntBASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AL391422.3-201ENST00000603791 2761 ntBASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 GPX1P1-201ENST00000388829 606 ntBASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 TERF1P2-201ENST00000583350 1212 ntBASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC104187.1-201ENST00000607510 612 ntBASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 SERP1-208ENST00000491660 830 ntTSL 2 BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 GAS2L1P2-201ENST00000436355 1356 ntBASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC27.85■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC092667.1-201ENST00000434301 2586 ntBASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 AC010331.1-201ENST00000611423 582 ntBASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC27.83■■■□□ 2.05
SENP3-EIF4A1A0A087X0R7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC27.82■■■□□ 2.04
SENP3-EIF4A1A0A087X0R7 AL049796.1-201ENST00000565336 1766 ntBASIC27.82■■■□□ 2.04
Retrieved 100 of 98,524 protein–RNA pairs in 166 ms