RNA–Protein interactions for RNA: ENST00000441350.2

VPS13B-204, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 1 (best) BASIC

Gene VPS13B, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-204ENST00000441350 NISCHQ9Y2I1 1504 aa49.39■■■■■ 5.5
VPS13B-204ENST00000441350 CCDC180Q9P1Z9 1646 aa43.44■■■■■ 4.54
VPS13B-204ENST00000441350 ABCC9O60706 1549 aa41.55■■■■■ 4.24
VPS13B-204ENST00000441350 ZCCHC6Q5VYS8 1495 aaKnown RBP41.35■■■■■ 4.21
VPS13B-204ENST00000441350 DCAF1Q9Y4B6 1507 aa40.91■■■■■ 4.14
VPS13B-204ENST00000441350 DCAF8L2P0C7V8 631 aa40.83■■■■■ 4.13
VPS13B-204ENST00000441350 MYO15BQ96JP2 1530 aa40.7■■■■■ 4.11
VPS13B-204ENST00000441350 NACADO15069 1562 aa40.61■■■■■ 4.09
VPS13B-204ENST00000441350 RB1CC1Q8TDY2 1594 aa40.38■■■■■ 4.06
VPS13B-204ENST00000441350 SCRIBQ14160 1630 aa39.73■■■■□ 3.95
VPS13B-204ENST00000441350 SHROOM4Q9ULL8 1493 aa39.64■■■■□ 3.94
VPS13B-204ENST00000441350 UNC13AQ9UPW8 1703 aa39.54■■■■□ 3.92
VPS13B-204ENST00000441350 BICRAQ9NZM4 1560 aa39.19■■■■□ 3.86
VPS13B-204ENST00000441350 PABPN1Q86U42 306 aaKnown RBP eCLIP39.02■■■■□ 3.84
VPS13B-204ENST00000441350 CECR2Q9BXF3 1484 aa38.39■■■■□ 3.74
VPS13B-204ENST00000441350 BAZ1AQ9NRL2 1556 aaPredicted RBP38.19■■■■□ 3.7
VPS13B-204ENST00000441350 SMARCA4P51532 1647 aa38.11■■■■□ 3.69
VPS13B-204ENST00000441350 MROH2BQ7Z745 1585 aa38.1■■■■□ 3.69
VPS13B-204ENST00000441350 EIF4G1Q04637 1599 aaKnown RBP38.04■■■■□ 3.68
VPS13B-204ENST00000441350 RSF1Q96T23 1441 aaPredicted RBP38.03■■■■□ 3.68
VPS13B-204ENST00000441350 SUPT5HO00267 1087 aaKnown RBP37.8■■■■□ 3.64
VPS13B-204ENST00000441350 WIZO95785 1651 aa37.73■■■■□ 3.63
VPS13B-204ENST00000441350 PEG3Q9GZU2 1588 aa37.73■■■■□ 3.63
VPS13B-204ENST00000441350 ATAD2BQ9ULI0 1458 aa37.65■■■■□ 3.62
VPS13B-204ENST00000441350 CC2D2AQ9P2K1 1620 aa37.64■■■■□ 3.62
VPS13B-204ENST00000441350 SMARCA2P51531 1590 aa37.63■■■■□ 3.61
VPS13B-204ENST00000441350 NCAPD3P42695 1498 aa37.48■■■■□ 3.59
VPS13B-204ENST00000441350 TOP2AP11388 1531 aaKnown RBP37.37■■■■□ 3.57
VPS13B-204ENST00000441350 BAZ1BQ9UIG0 1483 aaKnown RBP37.37■■■■□ 3.57
VPS13B-204ENST00000441350 HMGXB3Q12766 1538 aa37.37■■■■□ 3.57
VPS13B-204ENST00000441350 DNAJC5BQ9UF47 199 aa37.28■■■■□ 3.56
VPS13B-204ENST00000441350 CCDC88BA6NC98 1476 aa36.96■■■■□ 3.51
VPS13B-204ENST00000441350 CFTRP13569 1480 aa36.43■■■■□ 3.42
VPS13B-204ENST00000441350 CADPSQ9ULU8 1353 aa36.43■■■■□ 3.42
VPS13B-204ENST00000441350 LAMC3Q9Y6N6 1575 aa36.3■■■■□ 3.4
VPS13B-204ENST00000441350 NESP48681 1621 aa36.28■■■■□ 3.4
VPS13B-204ENST00000441350 PRDM2Q13029 1718 aa36.23■■■■□ 3.39
VPS13B-204ENST00000441350 PDS5BQ9NTI5 1447 aa36.01■■■■□ 3.36
VPS13B-204ENST00000441350 FANCD2Q9BXW9 1451 aa36■■■■□ 3.35
VPS13B-204ENST00000441350 ABCC8Q09428 1581 aa35.91■■■■□ 3.34
VPS13B-204ENST00000441350 CHIC1Q5VXU3 224 aa35.91■■■■□ 3.34
VPS13B-204ENST00000441350 KIF21AQ7Z4S6 1674 aa35.86■■■■□ 3.33
VPS13B-204ENST00000441350 CEP164Q9UPV0 1460 aa35.85■■■■□ 3.33
VPS13B-204ENST00000441350 WRNQ14191 1432 aaPredicted RBP eCLIP35.8■■■■□ 3.32
VPS13B-204ENST00000441350 ERCC6Q03468 1493 aa35.7■■■■□ 3.3
VPS13B-204ENST00000441350 CUX1P39880 1505 aa35.68■■■■□ 3.3
VPS13B-204ENST00000441350 SYNJ1O43426 1573 aa35.68■■■■□ 3.3
VPS13B-204ENST00000441350 TRIM41Q8WV44 630 aa35.65■■■■□ 3.3
VPS13B-204ENST00000441350 TOP2BQ02880 1626 aa35.63■■■■□ 3.29
VPS13B-204ENST00000441350 BIVM-ERCC5R4GMW8 1640 aa35.61■■■■□ 3.29
VPS13B-204ENST00000441350 URB2Q14146 1524 aaKnown RBP35.6■■■■□ 3.29
VPS13B-204ENST00000441350 MRC2Q9UBG0 1479 aa35.59■■■■□ 3.29
VPS13B-204ENST00000441350 DNMBPQ6XZF7 1577 aa35.59■■■■□ 3.29
VPS13B-204ENST00000441350 TOPBP1Q92547 1522 aa35.55■■■■□ 3.28
VPS13B-204ENST00000441350 THOC2Q8NI27 1593 aaKnown RBP35.49■■■■□ 3.27
VPS13B-204ENST00000441350 WDR62O43379 1518 aa35.46■■■■□ 3.27
VPS13B-204ENST00000441350 FGD5Q6ZNL6 1462 aa35.38■■■■□ 3.25
VPS13B-204ENST00000441350 POLA1P09884 1462 aaPredicted RBP35.32■■■■□ 3.25
VPS13B-204ENST00000441350 SOGA1O94964 1423 aa35.19■■■■□ 3.22
VPS13B-204ENST00000441350 CUX2O14529 1486 aa35.17■■■■□ 3.22
VPS13B-204ENST00000441350 RAD54L2Q9Y4B4 1467 aa35.17■■■■□ 3.22
VPS13B-204ENST00000441350 TARBP1Q13395 1621 aaKnown RBP35.1■■■■□ 3.21
VPS13B-204ENST00000441350 ABCA10Q8WWZ4 1543 aa35.09■■■■□ 3.21
VPS13B-204ENST00000441350 IFT140Q96RY7 1462 aa35.06■■■■□ 3.2
VPS13B-204ENST00000441350 WDR97A6NE52 1622 aa35.05■■■■□ 3.2
VPS13B-204ENST00000441350 RUSC2Q8N2Y8 1516 aa35.01■■■■□ 3.2
VPS13B-204ENST00000441350 EEA1Q15075 1411 aa34.97■■■■□ 3.19
VPS13B-204ENST00000441350 KIF27Q86VH2 1401 aa34.97■■■■□ 3.19
VPS13B-204ENST00000441350 FAM9AQ8IZU1 332 aaPredicted RBP34.9■■■■□ 3.18
VPS13B-204ENST00000441350 TDRD9Q8NDG6 1382 aaKnown RBP34.88■■■■□ 3.17
VPS13B-204ENST00000441350 ABCA5Q8WWZ7 1642 aa34.86■■■■□ 3.17
VPS13B-204ENST00000441350 ZNF608Q9ULD9 1512 aaPredicted RBP34.85■■■■□ 3.17
VPS13B-204ENST00000441350 GAPVD1Q14C86 1478 aa34.8■■■■□ 3.16
VPS13B-204ENST00000441350 CSRNP3Q8WYN3 585 aa34.79■■■■□ 3.16
VPS13B-204ENST00000441350 AQRO60306 1485 aaKnown RBP eCLIP34.78■■■■□ 3.16
VPS13B-204ENST00000441350 IGF1RP08069 1367 aa34.73■■■■□ 3.15
VPS13B-204ENST00000441350 EIF4G3O43432 1585 aaKnown RBP34.73■■■■□ 3.15
VPS13B-204ENST00000441350 ERICH3Q5RHP9 1530 aa34.68■■■■□ 3.14
VPS13B-204ENST00000441350 PBRM1Q86U86 1689 aa34.65■■■■□ 3.14
VPS13B-204ENST00000441350 GRIN2BQ13224 1484 aa34.64■■■■□ 3.14
VPS13B-204ENST00000441350 PRXQ9BXM0 1461 aa34.58■■■■□ 3.13
VPS13B-204ENST00000441350 CUL7Q14999 1698 aa34.54■■■■□ 3.12
VPS13B-204ENST00000441350 KIF21BO75037 1637 aa34.54■■■■□ 3.12
VPS13B-204ENST00000441350 CARMIL1Q5VZK9 1371 aa34.53■■■■□ 3.12
VPS13B-204ENST00000441350 SNAPC4Q5SXM2 1469 aa34.46■■■■□ 3.11
VPS13B-204ENST00000441350 LOC105371045A0A1W2PR82 267 aa34.45■■■■□ 3.11
VPS13B-204ENST00000441350 MAGI1Q96QZ7 1491 aaPredicted RBP34.45■■■■□ 3.1
VPS13B-204ENST00000441350 ADAMTS12P58397 1594 aa34.45■■■■□ 3.1
VPS13B-204ENST00000441350 FHAD1B1AJZ9 1412 aa34.43■■■■□ 3.1
VPS13B-204ENST00000441350 RAPGEF2Q9Y4G8 1499 aa34.43■■■■□ 3.1
VPS13B-204ENST00000441350 GOLGA3Q08378 1498 aa34.41■■■■□ 3.1
VPS13B-204ENST00000441350 EHMT2Q96KQ7 1210 aa34.36■■■■□ 3.09
VPS13B-204ENST00000441350 SYNJ2O15056 1496 aa34.3■■■■□ 3.08
VPS13B-204ENST00000441350 UBTFP17480 764 aaKnown RBP34.22■■■■□ 3.07
VPS13B-204ENST00000441350 GRIN2AQ12879 1464 aa34.21■■■■□ 3.07
VPS13B-204ENST00000441350 CHMP7Q8WUX9 453 aaPredicted RBP34.19■■■■□ 3.06
VPS13B-204ENST00000441350 TNIKQ9UKE5 1360 aa34.19■■■■□ 3.06
VPS13B-204ENST00000441350 FBLN2P98095 1184 aa34.13■■■■□ 3.05
VPS13B-204ENST00000441350 CHD1O14646 1710 aa34.11■■■■□ 3.05
VPS13B-204ENST00000441350 CTTNBP2Q8WZ74 1663 aa34.04■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms