Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LSM1O15116 AP005212.1-201ENST00000581547 1997 ntBASIC20.04■□□□□ 0.8
LSM1O15116 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
LSM1O15116 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.04■□□□□ 0.8
LSM1O15116 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.04■□□□□ 0.8
LSM1O15116 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.04■□□□□ 0.8
LSM1O15116 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LSM1O15116 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
LSM1O15116 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
LSM1O15116 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.03■□□□□ 0.8
LSM1O15116 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.03■□□□□ 0.8
LSM1O15116 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 AC073314.1-201ENST00000568729 2216 ntBASIC20.03■□□□□ 0.8
LSM1O15116 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.03■□□□□ 0.8
LSM1O15116 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.03■□□□□ 0.8
LSM1O15116 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 AL136967.2-201ENST00000623968 743 ntBASIC20.03■□□□□ 0.8
LSM1O15116 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LSM1O15116 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
LSM1O15116 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.03■□□□□ 0.8
LSM1O15116 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.03■□□□□ 0.8
LSM1O15116 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LSM1O15116 GABARAPL3-202ENST00000624044 1851 ntBASIC20.03■□□□□ 0.8
LSM1O15116 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LSM1O15116 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LSM1O15116 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LSM1O15116 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LSM1O15116 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.02■□□□□ 0.8
LSM1O15116 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
LSM1O15116 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.02■□□□□ 0.8
LSM1O15116 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.02■□□□□ 0.8
LSM1O15116 AC012414.1-201ENST00000556676 535 ntBASIC20.02■□□□□ 0.8
LSM1O15116 EEF1DP3-203ENST00000566025 782 ntBASIC20.02■□□□□ 0.8
LSM1O15116 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.8
LSM1O15116 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.02■□□□□ 0.8
LSM1O15116 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LSM1O15116 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.02■□□□□ 0.8
LSM1O15116 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LSM1O15116 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LSM1O15116 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.02■□□□□ 0.79
LSM1O15116 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
LSM1O15116 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
LSM1O15116 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.01■□□□□ 0.79
LSM1O15116 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
LSM1O15116 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.01■□□□□ 0.79
LSM1O15116 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
LSM1O15116 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
LSM1O15116 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20■□□□□ 0.79
LSM1O15116 AC053503.5-201ENST00000601508 636 ntBASIC20■□□□□ 0.79
LSM1O15116 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LSM1O15116 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM1O15116 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM1O15116 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
LSM1O15116 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LSM1O15116 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms