Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.656e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-204ENST00000472646 553 ntTSL 510.15□□□□□ -0.786e-7■□□□□ 9
CDC40O60508 STAG3L5P-PVRIG2P-PILRB-201ENST00000310771 3634 ntTSL 2 BASIC9.95□□□□□ -0.826e-7■□□□□ 9
CDC40O60508 HSP90AA1-205ENST00000555662 429 ntTSL 24.97□□□□□ -1.616e-7■□□□□ 9
CDC40O60508 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.042e-9■□□□□ 9
CDC40O60508 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.98■□□□□ 0.952e-9■□□□□ 9
CDC40O60508 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.95■□□□□ 0.942e-9■□□□□ 9
CDC40O60508 ERRFI1-205ENST00000487559 787 ntTSL 220.95■□□□□ 0.942e-9■□□□□ 9
CDC40O60508 CYBA-203ENST00000562209 624 ntTSL 518.08■□□□□ 0.482e-9■□□□□ 9
CDC40O60508 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.75■□□□□ 0.112e-9■□□□□ 9
CDC40O60508 CYBA-202ENST00000561972 464 ntTSL 314.55□□□□□ -0.082e-9■□□□□ 9
CDC40O60508 CYBA-204ENST00000563526 1052 ntTSL 214.39□□□□□ -0.112e-9■□□□□ 9
CDC40O60508 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.172e-9■□□□□ 9
CDC40O60508 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.81□□□□□ -0.22e-9■□□□□ 9
CDC40O60508 CYBA-207ENST00000566534 1006 ntTSL 512.72□□□□□ -0.372e-9■□□□□ 9
CDC40O60508 CYBA-209ENST00000568278 439 ntTSL 512.04□□□□□ -0.482e-9■□□□□ 9
CDC40O60508 HNRNPU-206ENST00000465881 883 ntTSL 55.98□□□□□ -1.455e-6■□□□□ 9
CDC40O60508 HNRNPU-220ENST00000639667 3940 ntTSL 25.36□□□□□ -1.555e-6■□□□□ 9
CDC40O60508 HNRNPU-215ENST00000638589 2225 ntTSL 22.73□□□□□ -1.975e-6■□□□□ 9
CDC40O60508 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.02■□□□□ 0.642e-10■□□□□ 8.9
CDC40O60508 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.55■□□□□ 0.242e-10■□□□□ 8.9
CDC40O60508 MYO19-204ENST00000610992 5743 ntTSL 213.48□□□□□ -0.252e-10■□□□□ 8.9
CDC40O60508 MYO19-226ENST00000621550 4299 ntTSL 511.7□□□□□ -0.542e-10■□□□□ 8.9
CDC40O60508 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC11.55□□□□□ -0.562e-10■□□□□ 8.9
CDC40O60508 MYO19-213ENST00000614623 4054 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.622e-10■□□□□ 8.9
CDC40O60508 SNHG1-225ENST00000545920 625 ntTSL 25.89□□□□□ -1.472e-10■□□□□ 8.9
CDC40O60508 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.322e-6■□□□□ 8.8
CDC40O60508 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.752e-6■□□□□ 8.8
CDC40O60508 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.65■■□□□ 1.066e-8■□□□□ 8.8
CDC40O60508 SPIRE2-209ENST00000566337 1369 ntTSL 520.85■□□□□ 0.936e-8■□□□□ 8.8
CDC40O60508 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.686e-8■□□□□ 8.8
CDC40O60508 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.326e-8■□□□□ 8.8
CDC40O60508 SPIRE2-206ENST00000564878 663 ntTSL 316.63■□□□□ 0.256e-8■□□□□ 8.8
CDC40O60508 TBCK-204ENST00000394708 3047 ntAPPRIS P1 TSL 1 (best) BASIC10.3□□□□□ -0.762e-8■□□□□ 8.8
CDC40O60508 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.942e-8■□□□□ 8.8
CDC40O60508 TBCK-202ENST00000361687 3312 ntTSL 1 (best) BASIC8.95□□□□□ -0.982e-8■□□□□ 8.8
CDC40O60508 TBCK-203ENST00000394706 3349 ntTSL 1 (best) BASIC8.44□□□□□ -1.062e-8■□□□□ 8.8
CDC40O60508 TBCK-206ENST00000467183 3566 ntTSL 1 (best)7.81□□□□□ -1.162e-8■□□□□ 8.8
CDC40O60508 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.582e-8■□□□□ 8.8
CDC40O60508 TBCK-208ENST00000503832 865 ntTSL 51.55□□□□□ -2.162e-8■□□□□ 8.8
CDC40O60508 TBCK-209ENST00000505574 282 ntTSL 41.38□□□□□ -2.192e-8■□□□□ 8.8
CDC40O60508 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.727e-8■□□□□ 8.8
CDC40O60508 SLC43A1-202ENST00000524995 953 ntTSL 318.37■□□□□ 0.531e-10■□□□□ 8.8
CDC40O60508 EIF4A1-206ENST00000577929 696 ntTSL 217.65■□□□□ 0.423e-7■□□□□ 8.8
CDC40O60508 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.273e-7■□□□□ 8.8
CDC40O60508 SLC43A1-207ENST00000533066 999 ntTSL 316.61■□□□□ 0.251e-10■□□□□ 8.8
CDC40O60508 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.191e-10■□□□□ 8.8
CDC40O60508 SLC43A1-210ENST00000534105 580 ntTSL 516.14■□□□□ 0.171e-10■□□□□ 8.8
CDC40O60508 NELFCD-208ENST00000482747 1701 ntTSL 215.66■□□□□ 0.13e-7■□□□□ 8.8
CDC40O60508 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.083e-7■□□□□ 8.8
CDC40O60508 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.33■□□□□ 0.047e-8■□□□□ 8.8
CDC40O60508 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.99□□□□□ -0.017e-8■□□□□ 8.8
CDC40O60508 SERINC2-204ENST00000491976 2807 ntTSL 214.97□□□□□ -0.017e-8■□□□□ 8.8
CDC40O60508 SLC43A1-206ENST00000530159 788 ntTSL 514.86□□□□□ -0.031e-10■□□□□ 8.8
CDC40O60508 SERINC2-203ENST00000487207 735 ntTSL 214.69□□□□□ -0.067e-8■□□□□ 8.8
CDC40O60508 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.081e-10■□□□□ 8.8
CDC40O60508 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.95□□□□□ -0.183e-7■□□□□ 8.8
CDC40O60508 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.57□□□□□ -0.247e-8■□□□□ 8.8
CDC40O60508 NAP1L4-206ENST00000469089 707 ntTSL 312.93□□□□□ -0.343e-9■□□□□ 8.8
CDC40O60508 SLC43A1-203ENST00000525764 556 ntTSL 311.96□□□□□ -0.491e-10■□□□□ 8.8
CDC40O60508 TBC1D8-201ENST00000376840 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.583e-7■□□□□ 8.8
CDC40O60508 SLC39A7-203ENST00000444757 1015 ntTSL 510.32□□□□□ -0.763e-7■□□□□ 8.8
CDC40O60508 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.933e-7■□□□□ 8.8
CDC40O60508 EIF4A1-217ENST00000581384 642 ntTSL 59.13□□□□□ -0.953e-7■□□□□ 8.8
CDC40O60508 TBC1D8-210ENST00000494011 660 ntTSL 29.1□□□□□ -0.953e-7■□□□□ 8.8
CDC40O60508 SEPT2-202ENST00000366210 672 ntTSL 37.75□□□□□ -1.172e-25■□□□□ 8.8
CDC40O60508 EIF4A2-201ENST00000323963 1919 ntAPPRIS P2 TSL 1 (best) BASIC9.19□□□□□ -0.942e-6■□□□□ 8.8
CDC40O60508 EIF4A2-203ENST00000426808 1751 ntTSL 1 (best)6.48□□□□□ -1.372e-6■□□□□ 8.8
CDC40O60508 EIF4A2-207ENST00000443963 1729 ntTSL 1 (best)6.18□□□□□ -1.422e-6■□□□□ 8.8
CDC40O60508 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.452e-6■□□□□ 8.8
CDC40O60508 EIF4A2-204ENST00000429589 1005 ntTSL 55.82□□□□□ -1.482e-6■□□□□ 8.8
CDC40O60508 EIF4A2-202ENST00000425053 1977 ntTSL 55.35□□□□□ -1.552e-6■□□□□ 8.8
CDC40O60508 EIF4A2-219ENST00000485101 5327 ntTSL 53.94□□□□□ -1.782e-6■□□□□ 8.8
CDC40O60508 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.558e-9■□□□□ 8.7
CDC40O60508 SPTBN1-201ENST00000333896 9075 ntTSL 1 (best) BASIC10.87□□□□□ -0.678e-9■□□□□ 8.7
CDC40O60508 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC8.65□□□□□ -1.028e-9■□□□□ 8.7
CDC40O60508 SPTAN1-201ENST00000358161 7794 ntTSL 1 (best) BASIC9.87□□□□□ -0.831e-6■□□□□ 8.7
CDC40O60508 SPTAN1-202ENST00000372731 7889 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.941e-6■□□□□ 8.7
CDC40O60508 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC9.15□□□□□ -0.951e-6■□□□□ 8.7
CDC40O60508 SPTAN1-223ENST00000630866 7498 ntTSL 5 BASIC8.68□□□□□ -1.021e-6■□□□□ 8.7
CDC40O60508 SPTAN1-222ENST00000630804 7812 ntTSL 5 BASIC8.66□□□□□ -1.021e-6■□□□□ 8.7
CDC40O60508 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.07□□□□□ -0.163e-6■□□□□ 8.7
CDC40O60508 HNRNPU-212ENST00000638230 1922 ntTSL 511.23□□□□□ -0.613e-6■□□□□ 8.7
CDC40O60508 HNRNPU-202ENST00000366525 2851 ntTSL 58.88□□□□□ -0.993e-6■□□□□ 8.7
CDC40O60508 HNRNPU-216ENST00000638716 2640 ntTSL 5 BASIC8.62□□□□□ -1.033e-6■□□□□ 8.7
CDC40O60508 HNRNPU-219ENST00000639628 4546 ntTSL 1 (best) BASIC8.02□□□□□ -1.123e-6■□□□□ 8.7
CDC40O60508 HNRNPU-222ENST00000639880 4239 ntTSL 57.84□□□□□ -1.153e-6■□□□□ 8.7
CDC40O60508 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC7.17□□□□□ -1.263e-6■□□□□ 8.7
CDC40O60508 HNRNPU-213ENST00000638301 3650 ntTSL 56□□□□□ -1.453e-6■□□□□ 8.7
CDC40O60508 HNRNPU-207ENST00000468690 5273 ntTSL 57.23□□□□□ -1.255e-6■□□□□ 8.7
CDC40O60508 DAZAP1-207ENST00000589484 3414 ntTSL 211.48□□□□□ -0.573e-6■□□□□ 8.7
CDC40O60508 RBM5-207ENST00000438369 560 ntTSL 411.1□□□□□ -0.635e-9■□□□□ 8.7
CDC40O60508 RBM6-207ENST00000434592 2342 ntTSL 25.88□□□□□ -1.475e-9■□□□□ 8.7
CDC40O60508 RBM5-204ENST00000417905 427 ntTSL 55.04□□□□□ -1.65e-9■□□□□ 8.7
CDC40O60508 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.214e-7■□□□□ 8.7
CDC40O60508 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.214e-7■□□□□ 8.7
CDC40O60508 NKTR-204ENST00000445842 560 ntTSL 521.27■■□□□ 15e-13■□□□□ 8.6
CDC40O60508 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16■□□□□ 0.155e-13■□□□□ 8.6
CDC40O60508 NKTR-214ENST00000478488 698 ntTSL 315.73■□□□□ 0.115e-13■□□□□ 8.6
CDC40O60508 NKTR-215ENST00000487466 2335 ntTSL 214.66□□□□□ -0.065e-13■□□□□ 8.6
Retrieved 100 of 5,364 protein–RNA pairs in 27.5 ms