Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 LINC01521-201ENST00000504184 1943 ntBASIC20.2■□□□□ 0.82
LSM1O15116 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 AC008764.7-201ENST00000593779 1081 ntBASIC20.2■□□□□ 0.82
LSM1O15116 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.2■□□□□ 0.82
LSM1O15116 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.2■□□□□ 0.82
LSM1O15116 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
LSM1O15116 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LSM1O15116 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM1O15116 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.19■□□□□ 0.82
LSM1O15116 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.19■□□□□ 0.82
LSM1O15116 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM1O15116 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM1O15116 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LSM1O15116 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.19■□□□□ 0.82
LSM1O15116 AC099791.1-201ENST00000416440 715 ntBASIC20.19■□□□□ 0.82
LSM1O15116 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.19■□□□□ 0.82
LSM1O15116 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LSM1O15116 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.18■□□□□ 0.82
LSM1O15116 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.18■□□□□ 0.82
LSM1O15116 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.18■□□□□ 0.82
LSM1O15116 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.18■□□□□ 0.82
LSM1O15116 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 AC027682.1-201ENST00000562846 899 ntBASIC20.18■□□□□ 0.82
LSM1O15116 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.18■□□□□ 0.82
LSM1O15116 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
LSM1O15116 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LSM1O15116 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.18■□□□□ 0.82
LSM1O15116 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
LSM1O15116 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LSM1O15116 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LSM1O15116 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
LSM1O15116 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.17■□□□□ 0.82
LSM1O15116 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.17■□□□□ 0.82
LSM1O15116 AC105233.4-201ENST00000642045 216 ntBASIC20.17■□□□□ 0.82
LSM1O15116 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.17■□□□□ 0.82
LSM1O15116 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 FEM1AP1-201ENST00000431297 1995 ntBASIC20.17■□□□□ 0.82
LSM1O15116 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.17■□□□□ 0.82
LSM1O15116 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LSM1O15116 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.17■□□□□ 0.82
LSM1O15116 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 AC005224.4-201ENST00000583262 1652 ntBASIC20.16■□□□□ 0.82
LSM1O15116 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
LSM1O15116 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.16■□□□□ 0.82
LSM1O15116 AC096631.2-201ENST00000436136 790 ntBASIC20.16■□□□□ 0.82
LSM1O15116 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.16■□□□□ 0.82
LSM1O15116 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.16■□□□□ 0.82
LSM1O15116 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LSM1O15116 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.16■□□□□ 0.82
LSM1O15116 TSPY26P-201ENST00000476365 1326 ntBASIC20.16■□□□□ 0.82
LSM1O15116 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LSM1O15116 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
LSM1O15116 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LSM1O15116 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
LSM1O15116 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LSM1O15116 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LSM1O15116 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
LSM1O15116 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.15■□□□□ 0.82
LSM1O15116 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LSM1O15116 LINC01006-201ENST00000333319 2292 ntBASIC20.15■□□□□ 0.82
LSM1O15116 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
LSM1O15116 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LSM1O15116 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.15■□□□□ 0.82
LSM1O15116 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms