Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
CHD8Q9HCK8 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.97■■□□□ 1.75
CHD8Q9HCK8 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
CHD8Q9HCK8 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CHD8Q9HCK8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CHD8Q9HCK8 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC25.96■■□□□ 1.75
CHD8Q9HCK8 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC25.94■■□□□ 1.74
CHD8Q9HCK8 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CHD8Q9HCK8 ILK-212ENST00000532063 1617 ntTSL 2 BASIC25.93■■□□□ 1.74
CHD8Q9HCK8 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC25.92■■□□□ 1.74
CHD8Q9HCK8 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
CHD8Q9HCK8 AC012354.3-201ENST00000623734 483 ntBASIC25.91■■□□□ 1.74
CHD8Q9HCK8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CHD8Q9HCK8 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
CHD8Q9HCK8 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CHD8Q9HCK8 NTF6A-201ENST00000591175 560 ntBASIC25.9■■□□□ 1.74
CHD8Q9HCK8 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.89■■□□□ 1.74
CHD8Q9HCK8 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.89■■□□□ 1.73
CHD8Q9HCK8 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
CHD8Q9HCK8 AC018358.1-201ENST00000631079 1402 ntBASIC25.88■■□□□ 1.73
CHD8Q9HCK8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CHD8Q9HCK8 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
CHD8Q9HCK8 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.86■■□□□ 1.73
CHD8Q9HCK8 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.86■■□□□ 1.73
CHD8Q9HCK8 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
CHD8Q9HCK8 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.85■■□□□ 1.73
CHD8Q9HCK8 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CHD8Q9HCK8 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CHD8Q9HCK8 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CHD8Q9HCK8 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CHD8Q9HCK8 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
CHD8Q9HCK8 DUX4L13-201ENST00000554103 1267 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L15-201ENST00000611059 1267 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L23-201ENST00000615195 1269 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L24-201ENST00000617576 1269 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L22-201ENST00000618238 1269 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L20-201ENST00000619712 1269 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L21-201ENST00000622058 1269 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L10-201ENST00000622460 1267 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 DUX4L25-201ENST00000624915 1269 ntBASIC25.83■■□□□ 1.72
CHD8Q9HCK8 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CHD8Q9HCK8 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
CHD8Q9HCK8 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CHD8Q9HCK8 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
CHD8Q9HCK8 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CHD8Q9HCK8 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CHD8Q9HCK8 AL592295.1-201ENST00000400984 884 ntBASIC25.8■■□□□ 1.72
CHD8Q9HCK8 GPX1-201ENST00000419349 1106 ntBASIC25.8■■□□□ 1.72
CHD8Q9HCK8 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
CHD8Q9HCK8 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CHD8Q9HCK8 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
CHD8Q9HCK8 MIR6090-201ENST00000622481 60 ntBASIC25.79■■□□□ 1.72
CHD8Q9HCK8 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.79■■□□□ 1.72
CHD8Q9HCK8 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC25.78■■□□□ 1.72
CHD8Q9HCK8 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
CHD8Q9HCK8 AC108673.1-201ENST00000510422 1159 ntBASIC25.78■■□□□ 1.72
CHD8Q9HCK8 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
CHD8Q9HCK8 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
CHD8Q9HCK8 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.75■■□□□ 1.71
CHD8Q9HCK8 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.75■■□□□ 1.71
CHD8Q9HCK8 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CHD8Q9HCK8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.74■■□□□ 1.71
CHD8Q9HCK8 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
CHD8Q9HCK8 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
CHD8Q9HCK8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CHD8Q9HCK8 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
CHD8Q9HCK8 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.72■■□□□ 1.71
CHD8Q9HCK8 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
CHD8Q9HCK8 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC25.7■■□□□ 1.71
CHD8Q9HCK8 AL033527.3-201ENST00000566366 1196 ntBASIC25.7■■□□□ 1.71
CHD8Q9HCK8 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
CHD8Q9HCK8 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
CHD8Q9HCK8 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.69■■□□□ 1.7
CHD8Q9HCK8 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
CHD8Q9HCK8 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.66■■□□□ 1.7
CHD8Q9HCK8 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CHD8Q9HCK8 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CHD8Q9HCK8 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.65■■□□□ 1.7
CHD8Q9HCK8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC25.65■■□□□ 1.7
CHD8Q9HCK8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.64■■□□□ 1.7
CHD8Q9HCK8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CHD8Q9HCK8 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CHD8Q9HCK8 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.62■■□□□ 1.69
CHD8Q9HCK8 WASH5P-204ENST00000632292 975 ntBASIC25.62■■□□□ 1.69
CHD8Q9HCK8 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC25.61■■□□□ 1.69
CHD8Q9HCK8 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC25.61■■□□□ 1.69
CHD8Q9HCK8 RARRES2P1-201ENST00000474487 481 ntBASIC25.59■■□□□ 1.69
CHD8Q9HCK8 AC008813.1-201ENST00000536597 885 ntBASIC25.59■■□□□ 1.69
CHD8Q9HCK8 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.59■■□□□ 1.69
CHD8Q9HCK8 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.59■■□□□ 1.69
CHD8Q9HCK8 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC25.58■■□□□ 1.69
CHD8Q9HCK8 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CHD8Q9HCK8 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CHD8Q9HCK8 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms