Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LINC00643Q86TS7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LINC00643Q86TS7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC16.97■□□□□ 0.31
LINC00643Q86TS7 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LINC00643Q86TS7 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LINC00643Q86TS7 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC16.96■□□□□ 0.31
LINC00643Q86TS7 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
LINC00643Q86TS7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LINC00643Q86TS7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
LINC00643Q86TS7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LINC00643Q86TS7 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LINC00643Q86TS7 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LINC00643Q86TS7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LINC00643Q86TS7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC16.94■□□□□ 0.3
LINC00643Q86TS7 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC16.94■□□□□ 0.3
LINC00643Q86TS7 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC16.93■□□□□ 0.3
LINC00643Q86TS7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LINC00643Q86TS7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC16.93■□□□□ 0.3
LINC00643Q86TS7 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LINC00643Q86TS7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
LINC00643Q86TS7 AL121749.1-202ENST00000609313 2153 ntBASIC16.92■□□□□ 0.3
LINC00643Q86TS7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LINC00643Q86TS7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LINC00643Q86TS7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC16.91■□□□□ 0.3
LINC00643Q86TS7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LINC00643Q86TS7 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LINC00643Q86TS7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LINC00643Q86TS7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LINC00643Q86TS7 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.89■□□□□ 0.29
LINC00643Q86TS7 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
LINC00643Q86TS7 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC16.89■□□□□ 0.29
LINC00643Q86TS7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LINC00643Q86TS7 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LINC00643Q86TS7 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC16.88■□□□□ 0.29
LINC00643Q86TS7 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LINC00643Q86TS7 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC16.86■□□□□ 0.29
LINC00643Q86TS7 LTK-203ENST00000453182 2412 ntTSL 2 BASIC16.86■□□□□ 0.29
LINC00643Q86TS7 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00643Q86TS7 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LINC00643Q86TS7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LINC00643Q86TS7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00643Q86TS7 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.84■□□□□ 0.29
LINC00643Q86TS7 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00643Q86TS7 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00643Q86TS7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LINC00643Q86TS7 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LINC00643Q86TS7 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00643Q86TS7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00643Q86TS7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00643Q86TS7 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LINC00643Q86TS7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LINC00643Q86TS7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC16.82■□□□□ 0.28
LINC00643Q86TS7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00643Q86TS7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00643Q86TS7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00643Q86TS7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00643Q86TS7 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LINC00643Q86TS7 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LINC00643Q86TS7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LINC00643Q86TS7 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC16.8■□□□□ 0.28
LINC00643Q86TS7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LINC00643Q86TS7 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LINC00643Q86TS7 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
LINC00643Q86TS7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC16.79■□□□□ 0.28
LINC00643Q86TS7 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC16.79■□□□□ 0.28
LINC00643Q86TS7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LINC00643Q86TS7 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00643Q86TS7 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LINC00643Q86TS7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LINC00643Q86TS7 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
LINC00643Q86TS7 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LINC00643Q86TS7 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
LINC00643Q86TS7 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00643Q86TS7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00643Q86TS7 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
LINC00643Q86TS7 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
LINC00643Q86TS7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
LINC00643Q86TS7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00643Q86TS7 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00643Q86TS7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
LINC00643Q86TS7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
LINC00643Q86TS7 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
LINC00643Q86TS7 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC16.73■□□□□ 0.27
LINC00643Q86TS7 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
LINC00643Q86TS7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
LINC00643Q86TS7 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms