Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.31■■■□□ 2.44
PGK1P00558 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
PGK1P00558 AC016575.1-201ENST00000607026 382 ntBASIC30.29■■■□□ 2.44
PGK1P00558 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
PGK1P00558 MIR3648-2-201ENST00000581792 180 ntBASIC30.28■■■□□ 2.44
PGK1P00558 MIR3648-1-201ENST00000615959 180 ntBASIC30.28■■■□□ 2.44
PGK1P00558 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.28■■■□□ 2.44
PGK1P00558 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
PGK1P00558 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
PGK1P00558 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.26■■■□□ 2.43
PGK1P00558 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.26■■■□□ 2.43
PGK1P00558 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.25■■■□□ 2.43
PGK1P00558 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
PGK1P00558 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
PGK1P00558 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
PGK1P00558 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.24■■■□□ 2.43
PGK1P00558 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.24■■■□□ 2.43
PGK1P00558 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
PGK1P00558 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
PGK1P00558 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
PGK1P00558 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
PGK1P00558 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.2■■■□□ 2.43
PGK1P00558 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.19■■■□□ 2.42
PGK1P00558 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
PGK1P00558 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
PGK1P00558 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.19■■■□□ 2.42
PGK1P00558 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
PGK1P00558 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
PGK1P00558 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
PGK1P00558 DUX4L11-201ENST00000611504 1267 ntBASIC30.18■■■□□ 2.42
PGK1P00558 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
PGK1P00558 DUX4L12-201ENST00000614593 1267 ntBASIC30.18■■■□□ 2.42
PGK1P00558 DUX4L14-201ENST00000621227 1267 ntBASIC30.18■■■□□ 2.42
PGK1P00558 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
PGK1P00558 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.17■■■□□ 2.42
PGK1P00558 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
PGK1P00558 CR559946.2-201ENST00000623684 991 ntBASIC30.16■■■□□ 2.42
PGK1P00558 LINC01971-201ENST00000617888 1048 ntBASIC30.15■■■□□ 2.42
PGK1P00558 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
PGK1P00558 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
PGK1P00558 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PGK1P00558 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.13■■■□□ 2.41
PGK1P00558 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
PGK1P00558 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
PGK1P00558 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.12■■■□□ 2.41
PGK1P00558 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
PGK1P00558 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.12■■■□□ 2.41
PGK1P00558 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.12■■■□□ 2.41
PGK1P00558 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.11■■■□□ 2.41
PGK1P00558 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.11■■■□□ 2.41
PGK1P00558 HSD17B1P1-201ENST00000590052 955 ntBASIC30.11■■■□□ 2.41
PGK1P00558 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.1■■■□□ 2.41
PGK1P00558 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
PGK1P00558 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
PGK1P00558 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.09■■■□□ 2.41
PGK1P00558 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.09■■■□□ 2.41
PGK1P00558 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
PGK1P00558 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.07■■■□□ 2.4
PGK1P00558 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.06■■■□□ 2.4
PGK1P00558 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.05■■■□□ 2.4
PGK1P00558 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
PGK1P00558 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
PGK1P00558 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
PGK1P00558 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
PGK1P00558 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.01■■■□□ 2.39
PGK1P00558 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30■■■□□ 2.39
PGK1P00558 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
PGK1P00558 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
PGK1P00558 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
PGK1P00558 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
PGK1P00558 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
PGK1P00558 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
PGK1P00558 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
PGK1P00558 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.96■■■□□ 2.39
PGK1P00558 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
PGK1P00558 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
PGK1P00558 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
PGK1P00558 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.95■■■□□ 2.39
PGK1P00558 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.95■■■□□ 2.39
PGK1P00558 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC29.95■■■□□ 2.38
PGK1P00558 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC29.94■■■□□ 2.38
PGK1P00558 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
PGK1P00558 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
PGK1P00558 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
PGK1P00558 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.92■■■□□ 2.38
PGK1P00558 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
PGK1P00558 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
PGK1P00558 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.9■■■□□ 2.38
PGK1P00558 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.89■■■□□ 2.38
PGK1P00558 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
PGK1P00558 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
PGK1P00558 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
PGK1P00558 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
PGK1P00558 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.87■■■□□ 2.37
PGK1P00558 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
PGK1P00558 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.87■■■□□ 2.37
PGK1P00558 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
PGK1P00558 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC29.86■■■□□ 2.37
PGK1P00558 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.85■■■□□ 2.37
PGK1P00558 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms