Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
COL6A5A8TX70 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL6A5A8TX70 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A5A8TX70 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.64■■□□□ 1.06
COL6A5A8TX70 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.64■■□□□ 1.05
COL6A5A8TX70 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A5A8TX70 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL6A5A8TX70 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
COL6A5A8TX70 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A5A8TX70 AC019069.1-201ENST00000610008 1333 ntBASIC21.6■■□□□ 1.05
COL6A5A8TX70 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL6A5A8TX70 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL6A5A8TX70 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL6A5A8TX70 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL6A5A8TX70 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
COL6A5A8TX70 NTF6A-201ENST00000591175 560 ntBASIC21.58■■□□□ 1.04
COL6A5A8TX70 AC012354.3-201ENST00000623734 483 ntBASIC21.58■■□□□ 1.04
COL6A5A8TX70 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL6A5A8TX70 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.57■■□□□ 1.04
COL6A5A8TX70 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.57■■□□□ 1.04
COL6A5A8TX70 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.57■■□□□ 1.04
COL6A5A8TX70 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
COL6A5A8TX70 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL6A5A8TX70 AC018358.1-201ENST00000631079 1402 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L13-201ENST00000554103 1267 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L15-201ENST00000611059 1267 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L23-201ENST00000615195 1269 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L24-201ENST00000617576 1269 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L22-201ENST00000618238 1269 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L20-201ENST00000619712 1269 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L21-201ENST00000622058 1269 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L10-201ENST00000622460 1267 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 DUX4L25-201ENST00000624915 1269 ntBASIC21.56■■□□□ 1.04
COL6A5A8TX70 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
COL6A5A8TX70 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL6A5A8TX70 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.56■■□□□ 1.04
COL6A5A8TX70 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL6A5A8TX70 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL6A5A8TX70 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
COL6A5A8TX70 AC108673.1-201ENST00000510422 1159 ntBASIC21.54■■□□□ 1.04
COL6A5A8TX70 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
COL6A5A8TX70 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL6A5A8TX70 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL6A5A8TX70 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC21.5■■□□□ 1.03
COL6A5A8TX70 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
COL6A5A8TX70 MIR6090-201ENST00000622481 60 ntBASIC21.5■■□□□ 1.03
COL6A5A8TX70 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A5A8TX70 GPX1-201ENST00000419349 1106 ntBASIC21.5■■□□□ 1.03
COL6A5A8TX70 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
COL6A5A8TX70 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL6A5A8TX70 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A5A8TX70 AL592295.1-201ENST00000400984 884 ntBASIC21.49■■□□□ 1.03
COL6A5A8TX70 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A5A8TX70 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A5A8TX70 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A5A8TX70 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A5A8TX70 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.47■■□□□ 1.03
COL6A5A8TX70 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL6A5A8TX70 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A5A8TX70 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A5A8TX70 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL6A5A8TX70 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL6A5A8TX70 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC21.45■■□□□ 1.02
COL6A5A8TX70 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A5A8TX70 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A5A8TX70 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A5A8TX70 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A5A8TX70 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
COL6A5A8TX70 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A5A8TX70 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A5A8TX70 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
COL6A5A8TX70 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL6A5A8TX70 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL6A5A8TX70 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC21.41■■□□□ 1.02
COL6A5A8TX70 HES6-205ENST00000409356 528 ntTSL 2 BASIC21.4■■□□□ 1.02
COL6A5A8TX70 AL033527.3-201ENST00000566366 1196 ntBASIC21.4■■□□□ 1.02
COL6A5A8TX70 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
COL6A5A8TX70 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.39■■□□□ 1.01
COL6A5A8TX70 WASH5P-204ENST00000632292 975 ntBASIC21.39■■□□□ 1.01
COL6A5A8TX70 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC21.38■■□□□ 1.01
COL6A5A8TX70 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL6A5A8TX70 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL6A5A8TX70 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL6A5A8TX70 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.35■■□□□ 1.01
COL6A5A8TX70 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.34■■□□□ 1.01
COL6A5A8TX70 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.34■■□□□ 1.01
COL6A5A8TX70 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL6A5A8TX70 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.33■■□□□ 1.01
COL6A5A8TX70 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.33■■□□□ 1.01
COL6A5A8TX70 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC21.32■■□□□ 1
COL6A5A8TX70 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
COL6A5A8TX70 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms