Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 AP004607.7-201ENST00000527152 1677 ntBASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 EDA-201ENST00000338901 1233 ntBASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 AC027682.1-201ENST00000562846 899 ntBASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RHBDD3Q9Y3P4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 AP001330.3-201ENST00000520123 633 ntBASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 IGHV3-19-201ENST00000521488 291 ntBASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 AL355001.2-201ENST00000620617 1191 ntBASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.41■□□□□ 0.54
RHBDD3Q9Y3P4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
RHBDD3Q9Y3P4 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 AF213884.3-201ENST00000563833 479 ntBASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 AL034346.1-201ENST00000568244 1277 ntBASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 SMUG1P1-201ENST00000590640 811 ntBASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDD3Q9Y3P4 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 AL157384.1-201ENST00000445995 2473 ntBASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 AL139246.5-201ENST00000606645 996 ntBASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 AL031432.3-201ENST00000607698 485 ntBASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 TSPY26P-201ENST00000476365 1326 ntBASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RHBDD3Q9Y3P4 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDD3Q9Y3P4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 192.9 ms