Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC28.38■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.38■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC28.38■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MPST-208ENST00000628507 698 ntTSL 5 BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC28.37■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 AC080038.1-201ENST00000611274 1154 ntBASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC28.36■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 Z98882.1-201ENST00000622160 2253 ntBASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC28.33■■■□□ 2.13
SENP3-EIF4A1A0A087X0R7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC28.33■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AL109923.1-201ENST00000618799 583 ntBASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 DYM-203ENST00000442713 2147 ntTSL 2 BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MIR572-201ENST00000384983 95 ntBASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SENP3-EIF4A1A0A087X0R7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 159.1 ms