Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 AC012313.1-201ENST00000593393 3059 ntBASIC14.8□□□□□ -0.04
VPS25Q9BRG1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS25Q9BRG1 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 AL133380.1-201ENST00000506013 324 ntBASIC14.79□□□□□ -0.04
VPS25Q9BRG1 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS25Q9BRG1 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS25Q9BRG1 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.77□□□□□ -0.04
VPS25Q9BRG1 ZNRF2P1-201ENST00000441407 443 ntBASIC14.77□□□□□ -0.05
VPS25Q9BRG1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 AC142472.1-201ENST00000612013 1741 ntBASIC14.77□□□□□ -0.05
VPS25Q9BRG1 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
VPS25Q9BRG1 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms