Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC026310.3-201ENST00000625186 2373 ntBASIC21.08■□□□□ 0.96
VPS9D1Q9Y2B5 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 AC007375.3-201ENST00000600936 2314 ntBASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 AC055733.4-201ENST00000638462 1354 ntBASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.07■□□□□ 0.96
VPS9D1Q9Y2B5 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VPS9D1Q9Y2B5 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.05■□□□□ 0.96
VPS9D1Q9Y2B5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
VPS9D1Q9Y2B5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VPS9D1Q9Y2B5 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 IRS3P-201ENST00000223076 1006 ntBASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 MIR638-201ENST00000385237 100 ntBASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.02■□□□□ 0.96
VPS9D1Q9Y2B5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms