Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.82■□□□□ 0.6
MMP28Q9H239 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC18.82■□□□□ 0.6
MMP28Q9H239 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
MMP28Q9H239 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MMP28Q9H239 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
MMP28Q9H239 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
MMP28Q9H239 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
MMP28Q9H239 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MMP28Q9H239 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MMP28Q9H239 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MMP28Q9H239 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
MMP28Q9H239 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MMP28Q9H239 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MMP28Q9H239 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.81■□□□□ 0.6
MMP28Q9H239 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.81■□□□□ 0.6
MMP28Q9H239 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.81■□□□□ 0.6
MMP28Q9H239 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MMP28Q9H239 ALDH1A3-203ENST00000557963 1670 ntBASIC18.81■□□□□ 0.6
MMP28Q9H239 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MMP28Q9H239 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.81■□□□□ 0.6
MMP28Q9H239 AF131216.4-201ENST00000638924 1588 ntBASIC18.81■□□□□ 0.6
MMP28Q9H239 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.8■□□□□ 0.6
MMP28Q9H239 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.8■□□□□ 0.6
MMP28Q9H239 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.8■□□□□ 0.6
MMP28Q9H239 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
MMP28Q9H239 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 Z98882.1-201ENST00000622160 2253 ntBASIC18.8■□□□□ 0.6
MMP28Q9H239 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MMP28Q9H239 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.8■□□□□ 0.6
MMP28Q9H239 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
MMP28Q9H239 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.79■□□□□ 0.6
MMP28Q9H239 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 AL022069.1-201ENST00000568025 1636 ntBASIC18.79■□□□□ 0.6
MMP28Q9H239 AL353803.4-201ENST00000565882 1934 ntBASIC18.79■□□□□ 0.6
MMP28Q9H239 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.79■□□□□ 0.6
MMP28Q9H239 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.79■□□□□ 0.6
MMP28Q9H239 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.79■□□□□ 0.6
MMP28Q9H239 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
MMP28Q9H239 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.79■□□□□ 0.6
MMP28Q9H239 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MMP28Q9H239 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
MMP28Q9H239 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
MMP28Q9H239 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.78■□□□□ 0.6
MMP28Q9H239 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.78■□□□□ 0.6
MMP28Q9H239 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 STK32C-205ENST00000456004 607 ntTSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
MMP28Q9H239 AC137630.3-201ENST00000607245 391 ntBASIC18.78■□□□□ 0.6
MMP28Q9H239 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
MMP28Q9H239 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.78■□□□□ 0.6
MMP28Q9H239 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MMP28Q9H239 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.78■□□□□ 0.6
MMP28Q9H239 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MMP28Q9H239 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.77■□□□□ 0.6
MMP28Q9H239 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.77■□□□□ 0.6
MMP28Q9H239 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
MMP28Q9H239 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 OR2A1-AS1-204ENST00000470435 602 ntBASIC18.77■□□□□ 0.6
MMP28Q9H239 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
MMP28Q9H239 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
MMP28Q9H239 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
MMP28Q9H239 AC131212.1-201ENST00000613771 668 ntBASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms