Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC092068.2-201ENST00000590491 1708 ntBASIC18.52■□□□□ 0.56
ABCA4P78363 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA4P78363 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.52■□□□□ 0.56
ABCA4P78363 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA4P78363 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA4P78363 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA4P78363 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.52■□□□□ 0.56
ABCA4P78363 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.52■□□□□ 0.56
ABCA4P78363 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA4P78363 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
ABCA4P78363 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
ABCA4P78363 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
ABCA4P78363 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.52■□□□□ 0.55
ABCA4P78363 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.52■□□□□ 0.55
ABCA4P78363 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.52■□□□□ 0.55
ABCA4P78363 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.52■□□□□ 0.55
ABCA4P78363 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
ABCA4P78363 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.51■□□□□ 0.55
ABCA4P78363 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.51■□□□□ 0.55
ABCA4P78363 AC133552.2-202ENST00000575694 574 ntBASIC18.51■□□□□ 0.55
ABCA4P78363 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC18.51■□□□□ 0.55
ABCA4P78363 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
ABCA4P78363 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.51■□□□□ 0.55
ABCA4P78363 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 POU5F1P3-201ENST00000428824 1078 ntBASIC18.51■□□□□ 0.55
ABCA4P78363 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
ABCA4P78363 AC138907.5-202ENST00000569484 235 ntBASIC18.51■□□□□ 0.55
ABCA4P78363 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ABCA4P78363 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
ABCA4P78363 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.5■□□□□ 0.55
ABCA4P78363 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.5■□□□□ 0.55
ABCA4P78363 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.5■□□□□ 0.55
ABCA4P78363 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.5■□□□□ 0.55
ABCA4P78363 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
ABCA4P78363 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
ABCA4P78363 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
ABCA4P78363 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.49■□□□□ 0.55
ABCA4P78363 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 AL121832.2-201ENST00000610979 668 ntBASIC18.49■□□□□ 0.55
ABCA4P78363 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ABCA4P78363 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.49■□□□□ 0.55
ABCA4P78363 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ABCA4P78363 ITM2C-210ENST00000620962 501 ntBASIC18.49■□□□□ 0.55
ABCA4P78363 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
ABCA4P78363 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
ABCA4P78363 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
ABCA4P78363 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
ABCA4P78363 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
ABCA4P78363 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.49■□□□□ 0.55
ABCA4P78363 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
ABCA4P78363 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
ABCA4P78363 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.48■□□□□ 0.55
ABCA4P78363 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.48■□□□□ 0.55
ABCA4P78363 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.48■□□□□ 0.55
ABCA4P78363 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
ABCA4P78363 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
ABCA4P78363 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
ABCA4P78363 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
ABCA4P78363 AC010141.2-201ENST00000452426 721 ntBASIC18.48■□□□□ 0.55
ABCA4P78363 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.48■□□□□ 0.55
ABCA4P78363 AC010536.3-201ENST00000620306 533 ntBASIC18.48■□□□□ 0.55
ABCA4P78363 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.48■□□□□ 0.55
ABCA4P78363 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
ABCA4P78363 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
ABCA4P78363 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
ABCA4P78363 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.47■□□□□ 0.55
ABCA4P78363 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.47■□□□□ 0.55
ABCA4P78363 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
ABCA4P78363 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC18.46■□□□□ 0.55
ABCA4P78363 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ABCA4P78363 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ABCA4P78363 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ABCA4P78363 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.46■□□□□ 0.55
ABCA4P78363 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.46■□□□□ 0.55
ABCA4P78363 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
ABCA4P78363 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
ABCA4P78363 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.46■□□□□ 0.54
ABCA4P78363 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.46■□□□□ 0.54
ABCA4P78363 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 338.6 ms