Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LSM1O15116 AC005229.4-201ENST00000610085 2198 ntBASIC20.69■□□□□ 0.9
LSM1O15116 Z98882.1-201ENST00000622160 2253 ntBASIC20.69■□□□□ 0.9
LSM1O15116 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.69■□□□□ 0.9
LSM1O15116 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.69■□□□□ 0.9
LSM1O15116 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LSM1O15116 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.68■□□□□ 0.9
LSM1O15116 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.68■□□□□ 0.9
LSM1O15116 AC092171.4-201ENST00000609130 632 ntBASIC20.68■□□□□ 0.9
LSM1O15116 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LSM1O15116 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.68■□□□□ 0.9
LSM1O15116 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.68■□□□□ 0.9
LSM1O15116 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.68■□□□□ 0.9
LSM1O15116 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.68■□□□□ 0.9
LSM1O15116 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LSM1O15116 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
LSM1O15116 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LSM1O15116 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LSM1O15116 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LSM1O15116 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LSM1O15116 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LSM1O15116 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.67■□□□□ 0.9
LSM1O15116 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
LSM1O15116 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LSM1O15116 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.66■□□□□ 0.9
LSM1O15116 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.66■□□□□ 0.9
LSM1O15116 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.66■□□□□ 0.9
LSM1O15116 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.66■□□□□ 0.9
LSM1O15116 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LSM1O15116 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LSM1O15116 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
LSM1O15116 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.65■□□□□ 0.9
LSM1O15116 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.65■□□□□ 0.9
LSM1O15116 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
LSM1O15116 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.65■□□□□ 0.9
LSM1O15116 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.65■□□□□ 0.9
LSM1O15116 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM1O15116 AC010525.1-201ENST00000585559 441 ntBASIC20.65■□□□□ 0.9
LSM1O15116 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LSM1O15116 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
LSM1O15116 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.64■□□□□ 0.9
LSM1O15116 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LSM1O15116 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
LSM1O15116 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.64■□□□□ 0.9
LSM1O15116 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LSM1O15116 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LSM1O15116 AC010141.3-201ENST00000456659 717 ntBASIC20.64■□□□□ 0.89
LSM1O15116 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.64■□□□□ 0.89
LSM1O15116 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LSM1O15116 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
LSM1O15116 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LSM1O15116 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
LSM1O15116 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.63■□□□□ 0.89
LSM1O15116 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.63■□□□□ 0.89
LSM1O15116 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.63■□□□□ 0.89
LSM1O15116 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.63■□□□□ 0.89
LSM1O15116 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.63■□□□□ 0.89
LSM1O15116 AC087239.1-201ENST00000622671 572 ntBASIC20.63■□□□□ 0.89
LSM1O15116 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LSM1O15116 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.62■□□□□ 0.89
LSM1O15116 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.62■□□□□ 0.89
LSM1O15116 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LSM1O15116 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms