Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
BLOC1S4Q9NUP1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
BLOC1S4Q9NUP1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC24.08■■□□□ 1.45
BLOC1S4Q9NUP1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC24.08■■□□□ 1.45
BLOC1S4Q9NUP1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.45
BLOC1S4Q9NUP1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
BLOC1S4Q9NUP1 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
BLOC1S4Q9NUP1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
BLOC1S4Q9NUP1 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
BLOC1S4Q9NUP1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.44
BLOC1S4Q9NUP1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
BLOC1S4Q9NUP1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 AC010542.4-201ENST00000563151 1910 ntBASIC24.06■■□□□ 1.44
BLOC1S4Q9NUP1 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 MIR572-201ENST00000384983 95 ntBASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.05■■□□□ 1.44
BLOC1S4Q9NUP1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
BLOC1S4Q9NUP1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 AP004607.7-201ENST00000527152 1677 ntBASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC24.03■■□□□ 1.44
BLOC1S4Q9NUP1 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 AC105233.4-201ENST00000642045 216 ntBASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
BLOC1S4Q9NUP1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 FBXW4P1-201ENST00000426721 2239 ntBASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
BLOC1S4Q9NUP1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24■■□□□ 1.43
BLOC1S4Q9NUP1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24■■□□□ 1.43
BLOC1S4Q9NUP1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
BLOC1S4Q9NUP1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24■■□□□ 1.43
BLOC1S4Q9NUP1 AC105265.2-201ENST00000467189 838 ntBASIC24■■□□□ 1.43
BLOC1S4Q9NUP1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms