Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.77■□□□□ 0.91
LSM1O15116 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.77■□□□□ 0.91
LSM1O15116 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LSM1O15116 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.76■□□□□ 0.91
LSM1O15116 MIR3181-201ENST00000578512 73 ntBASIC20.76■□□□□ 0.91
LSM1O15116 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
LSM1O15116 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.76■□□□□ 0.91
LSM1O15116 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
LSM1O15116 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.76■□□□□ 0.91
LSM1O15116 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM1O15116 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.75■□□□□ 0.91
LSM1O15116 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.75■□□□□ 0.91
LSM1O15116 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LSM1O15116 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.75■□□□□ 0.91
LSM1O15116 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.74■□□□□ 0.91
LSM1O15116 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.74■□□□□ 0.91
LSM1O15116 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.74■□□□□ 0.91
LSM1O15116 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.74■□□□□ 0.91
LSM1O15116 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.74■□□□□ 0.91
LSM1O15116 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM1O15116 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LSM1O15116 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
LSM1O15116 OR2I1P-207ENST00000453522 948 ntBASIC20.73■□□□□ 0.91
LSM1O15116 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.73■□□□□ 0.91
LSM1O15116 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.73■□□□□ 0.91
LSM1O15116 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LSM1O15116 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
LSM1O15116 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM1O15116 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM1O15116 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LSM1O15116 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.72■□□□□ 0.91
LSM1O15116 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.72■□□□□ 0.91
LSM1O15116 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
LSM1O15116 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.72■□□□□ 0.91
LSM1O15116 AL512631.2-201ENST00000604634 923 ntBASIC20.72■□□□□ 0.91
LSM1O15116 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.72■□□□□ 0.91
LSM1O15116 AC068587.7-201ENST00000641602 218 ntBASIC20.72■□□□□ 0.91
LSM1O15116 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
LSM1O15116 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM1O15116 AC026471.6-201ENST00000622954 1905 ntBASIC20.72■□□□□ 0.91
LSM1O15116 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM1O15116 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.71■□□□□ 0.91
LSM1O15116 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
LSM1O15116 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.71■□□□□ 0.91
LSM1O15116 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.71■□□□□ 0.91
LSM1O15116 SRD5A1P1-201ENST00000442297 786 ntBASIC20.71■□□□□ 0.91
LSM1O15116 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
LSM1O15116 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LSM1O15116 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.71■□□□□ 0.91
LSM1O15116 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LSM1O15116 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.71■□□□□ 0.91
LSM1O15116 OR7E47P-201ENST00000546390 1422 ntBASIC20.7■□□□□ 0.9
LSM1O15116 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.7■□□□□ 0.9
LSM1O15116 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM1O15116 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.7■□□□□ 0.9
LSM1O15116 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
LSM1O15116 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LSM1O15116 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM1O15116 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM1O15116 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
LSM1O15116 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM1O15116 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LSM1O15116 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms