Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 pRNA.6-201ENST00000610482 90 ntBASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 pRNA.5-201ENST00000612139 90 ntBASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 pRNA.11-201ENST00000618423 90 ntBASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 pRNA.13-201ENST00000619112 90 ntBASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.88■□□□□ 0.61
RHBDD3Q9Y3P4 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
RHBDD3Q9Y3P4 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 AL024507.2-201ENST00000606070 2574 ntBASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 FAM99A-202ENST00000538190 1989 ntBASIC18.86■□□□□ 0.61
RHBDD3Q9Y3P4 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 MIR4466-201ENST00000606121 54 ntBASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RHBDD3Q9Y3P4 AC133637.1-201ENST00000624115 1537 ntBASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 MIR3181-201ENST00000578512 73 ntBASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RHBDD3Q9Y3P4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
RHBDD3Q9Y3P4 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
RHBDD3Q9Y3P4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
RHBDD3Q9Y3P4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RHBDD3Q9Y3P4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RHBDD3Q9Y3P4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.83■□□□□ 0.61
RHBDD3Q9Y3P4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.83■□□□□ 0.6
RHBDD3Q9Y3P4 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RHBDD3Q9Y3P4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RHBDD3Q9Y3P4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RHBDD3Q9Y3P4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.82■□□□□ 0.6
RHBDD3Q9Y3P4 AC131281.2-201ENST00000520478 145 ntBASIC18.82■□□□□ 0.6
RHBDD3Q9Y3P4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RHBDD3Q9Y3P4 AC092171.4-201ENST00000609130 632 ntBASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms