Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHGA3Q9Y5H0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 AL137784.2-201ENST00000607332 1000 ntBASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 IKBKGP1-201ENST00000612193 1073 ntBASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA3Q9Y5H0 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 AP005435.1-201ENST00000529293 1178 ntBASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA3Q9Y5H0 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 AC090192.1-201ENST00000517740 490 ntBASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 MIR6084-201ENST00000622012 110 ntBASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
PCDHGA3Q9Y5H0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 AC010525.1-201ENST00000585559 441 ntBASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA3Q9Y5H0 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 CCDC92B-201ENST00000575506 885 ntBASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 AC092437.1-201ENST00000624794 1048 ntBASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA3Q9Y5H0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.14■□□□□ 0.98
PCDHGA3Q9Y5H0 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHGA3Q9Y5H0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PCDHGA3Q9Y5H0 LINC02228-203ENST00000641970 1355 ntBASIC21.14■□□□□ 0.98
PCDHGA3Q9Y5H0 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA3Q9Y5H0 TERF1P2-201ENST00000583350 1212 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 716 ms