Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 AP001330.3-201ENST00000520123 633 ntBASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 EI24-211ENST00000534546 1544 ntTSL 2 BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SCUBE3Q8IX30 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 MIR939-201ENST00000401314 82 ntBASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 AC099791.1-201ENST00000416440 715 ntBASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 AF213884.3-201ENST00000563833 479 ntBASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 AL031602.1-201ENST00000633169 911 ntBASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SCUBE3Q8IX30 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SCUBE3Q8IX30 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 AC092666.2-201ENST00000613287 246 ntBASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SCUBE3Q8IX30 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 AC142381.2-201ENST00000566120 298 ntBASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 AC126544.1-201ENST00000580842 1059 ntBASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
SCUBE3Q8IX30 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 AC027682.1-201ENST00000562846 899 ntBASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 AC233723.2-201ENST00000623798 2106 ntBASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 RASA4CP-201ENST00000424092 1398 ntBASIC23.01■■□□□ 1.27
SCUBE3Q8IX30 AC012676.1-201ENST00000574705 1949 ntBASIC23■■□□□ 1.27
SCUBE3Q8IX30 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SCUBE3Q8IX30 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
SCUBE3Q8IX30 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23■■□□□ 1.27
SCUBE3Q8IX30 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23■■□□□ 1.27
SCUBE3Q8IX30 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC23■■□□□ 1.27
SCUBE3Q8IX30 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC23■■□□□ 1.27
SCUBE3Q8IX30 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SCUBE3Q8IX30 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SCUBE3Q8IX30 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 AC091305.1-201ENST00000479476 895 ntBASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 AP005435.1-201ENST00000529293 1178 ntBASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 AC068587.7-201ENST00000641602 218 ntBASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SCUBE3Q8IX30 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.98■■□□□ 1.27
SCUBE3Q8IX30 ESRRAP2-201ENST00000418437 1549 ntBASIC22.98■■□□□ 1.27
SCUBE3Q8IX30 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms