Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 AC092171.4-201ENST00000609130 632 ntBASIC20.99■□□□□ 0.95
VMP1Q96GC9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.99■□□□□ 0.95
VMP1Q96GC9 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 C1orf229-201ENST00000623686 2258 ntBASIC20.99■□□□□ 0.95
VMP1Q96GC9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VMP1Q96GC9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VMP1Q96GC9 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.98■□□□□ 0.95
VMP1Q96GC9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VMP1Q96GC9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VMP1Q96GC9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VMP1Q96GC9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VMP1Q96GC9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.97■□□□□ 0.95
VMP1Q96GC9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VMP1Q96GC9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
VMP1Q96GC9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 AC096631.2-201ENST00000436136 790 ntBASIC20.96■□□□□ 0.95
VMP1Q96GC9 DUX4L19-201ENST00000557448 1267 ntBASIC20.96■□□□□ 0.95
VMP1Q96GC9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VMP1Q96GC9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.95■□□□□ 0.94
VMP1Q96GC9 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VMP1Q96GC9 AL139246.5-201ENST00000606645 996 ntBASIC20.95■□□□□ 0.94
VMP1Q96GC9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.95■□□□□ 0.94
VMP1Q96GC9 AC241377.3-202ENST00000626088 1088 ntBASIC20.95■□□□□ 0.94
VMP1Q96GC9 AC241585.3-202ENST00000628937 1088 ntBASIC20.95■□□□□ 0.94
VMP1Q96GC9 AC245100.8-202ENST00000629247 1058 ntBASIC20.95■□□□□ 0.94
VMP1Q96GC9 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.95■□□□□ 0.94
VMP1Q96GC9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.95■□□□□ 0.94
VMP1Q96GC9 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VMP1Q96GC9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VMP1Q96GC9 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VMP1Q96GC9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VMP1Q96GC9 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.94■□□□□ 0.94
VMP1Q96GC9 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
VMP1Q96GC9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.94■□□□□ 0.94
VMP1Q96GC9 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.94■□□□□ 0.94
VMP1Q96GC9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.94■□□□□ 0.94
VMP1Q96GC9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.94■□□□□ 0.94
VMP1Q96GC9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VMP1Q96GC9 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VMP1Q96GC9 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VMP1Q96GC9 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VMP1Q96GC9 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.93■□□□□ 0.94
VMP1Q96GC9 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
VMP1Q96GC9 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.93■□□□□ 0.94
VMP1Q96GC9 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VMP1Q96GC9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VMP1Q96GC9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VMP1Q96GC9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VMP1Q96GC9 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.92■□□□□ 0.94
VMP1Q96GC9 AC127496.7-201ENST00000625110 1798 ntBASIC20.92■□□□□ 0.94
VMP1Q96GC9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VMP1Q96GC9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
VMP1Q96GC9 AC099791.2-201ENST00000605725 427 ntBASIC20.92■□□□□ 0.94
VMP1Q96GC9 AC110285.6-201ENST00000617652 491 ntBASIC20.92■□□□□ 0.94
VMP1Q96GC9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
VMP1Q96GC9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VMP1Q96GC9 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
VMP1Q96GC9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms