Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-1-201ENST00000616420 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-2-201ENST00000616483 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-4-201ENST00000617390 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MIR6724-3-201ENST00000622482 92 ntBASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 AC233723.2-201ENST00000623798 2106 ntBASIC29.65■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC29.64■■■□□ 2.34
SENP3-EIF4A1A0A087X0R7 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AL031432.3-201ENST00000607698 485 ntBASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC29.62■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AC144652.1-201ENST00000609974 1624 ntBASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 AL356740.2-201ENST00000601559 647 ntBASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.58■■■□□ 2.33
SENP3-EIF4A1A0A087X0R7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 IKBKGP1-201ENST00000612193 1073 ntBASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC006455.2-201ENST00000429931 906 ntBASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
SENP3-EIF4A1A0A087X0R7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC29.55■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 185.3 ms