Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC53A6NM62 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.99■■□□□ 1.43
LRRC53A6NM62 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC53A6NM62 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC23.99■■□□□ 1.43
LRRC53A6NM62 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC53A6NM62 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC23.99■■□□□ 1.43
LRRC53A6NM62 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC53A6NM62 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC23.99■■□□□ 1.43
LRRC53A6NM62 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC53A6NM62 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
LRRC53A6NM62 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
LRRC53A6NM62 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
LRRC53A6NM62 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
LRRC53A6NM62 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
LRRC53A6NM62 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
LRRC53A6NM62 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.98■■□□□ 1.43
LRRC53A6NM62 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
LRRC53A6NM62 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
LRRC53A6NM62 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC23.97■■□□□ 1.43
LRRC53A6NM62 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
LRRC53A6NM62 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.97■■□□□ 1.43
LRRC53A6NM62 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC23.97■■□□□ 1.43
LRRC53A6NM62 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC23.97■■□□□ 1.43
LRRC53A6NM62 MIR6722-201ENST00000617286 78 ntBASIC23.97■■□□□ 1.43
LRRC53A6NM62 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
LRRC53A6NM62 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
LRRC53A6NM62 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 AC005703.6-201ENST00000623265 1329 ntBASIC23.96■■□□□ 1.43
LRRC53A6NM62 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.96■■□□□ 1.43
LRRC53A6NM62 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
LRRC53A6NM62 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC23.95■■□□□ 1.43
LRRC53A6NM62 AC139530.1-201ENST00000575312 1977 ntBASIC23.95■■□□□ 1.42
LRRC53A6NM62 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC23.95■■□□□ 1.42
LRRC53A6NM62 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
LRRC53A6NM62 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
LRRC53A6NM62 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.95■■□□□ 1.42
LRRC53A6NM62 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
LRRC53A6NM62 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.95■■□□□ 1.42
LRRC53A6NM62 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.95■■□□□ 1.42
LRRC53A6NM62 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
LRRC53A6NM62 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LRRC53A6NM62 AC087742.1-201ENST00000575880 1738 ntBASIC23.94■■□□□ 1.42
LRRC53A6NM62 CLTA-206ENST00000466396 695 ntTSL 2 BASIC23.94■■□□□ 1.42
LRRC53A6NM62 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.94■■□□□ 1.42
LRRC53A6NM62 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LRRC53A6NM62 AC080038.3-201ENST00000623346 1952 ntBASIC23.94■■□□□ 1.42
LRRC53A6NM62 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
LRRC53A6NM62 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.94■■□□□ 1.42
LRRC53A6NM62 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC53A6NM62 BX664725.1-201ENST00000438252 379 ntBASIC23.93■■□□□ 1.42
LRRC53A6NM62 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC23.93■■□□□ 1.42
LRRC53A6NM62 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC53A6NM62 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC53A6NM62 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.93■■□□□ 1.42
LRRC53A6NM62 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC53A6NM62 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC53A6NM62 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
LRRC53A6NM62 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC23.93■■□□□ 1.42
LRRC53A6NM62 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC23.92■■□□□ 1.42
LRRC53A6NM62 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.92■■□□□ 1.42
LRRC53A6NM62 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 LINC01529-204ENST00000636474 1715 ntBASIC23.92■■□□□ 1.42
LRRC53A6NM62 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.92■■□□□ 1.42
LRRC53A6NM62 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
LRRC53A6NM62 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.92■■□□□ 1.42
LRRC53A6NM62 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms