Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA3Q9Y5H0 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA3Q9Y5H0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA3Q9Y5H0 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.58■■□□□ 1.04
PCDHGA3Q9Y5H0 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.58■■□□□ 1.04
PCDHGA3Q9Y5H0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 BX842568.3-201ENST00000418104 571 ntBASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 AC233992.3-201ENST00000607491 485 ntBASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 AC009086.3-201ENST00000623486 1008 ntBASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.57■■□□□ 1.04
PCDHGA3Q9Y5H0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 MIR3181-201ENST00000578512 73 ntBASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
PCDHGA3Q9Y5H0 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 AC006455.2-201ENST00000429931 906 ntBASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 AC087623.3-201ENST00000607047 1098 ntBASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
PCDHGA3Q9Y5H0 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA3Q9Y5H0 LINC01124-201ENST00000409786 2117 ntBASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA3Q9Y5H0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 AL162430.1-201ENST00000480705 870 ntBASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA3Q9Y5H0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA3Q9Y5H0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA3Q9Y5H0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHGA3Q9Y5H0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDHGA3Q9Y5H0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHGA3Q9Y5H0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms