Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VMP1Q96GC9 C9orf163-202ENST00000624034 2573 ntBASIC21.21■□□□□ 0.99
VMP1Q96GC9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
VMP1Q96GC9 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.21■□□□□ 0.99
VMP1Q96GC9 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VMP1Q96GC9 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
VMP1Q96GC9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VMP1Q96GC9 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.21■□□□□ 0.99
VMP1Q96GC9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VMP1Q96GC9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.21■□□□□ 0.99
VMP1Q96GC9 LINC00565-201ENST00000562710 2331 ntBASIC21.21■□□□□ 0.99
VMP1Q96GC9 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
VMP1Q96GC9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VMP1Q96GC9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VMP1Q96GC9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
VMP1Q96GC9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VMP1Q96GC9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VMP1Q96GC9 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 ALDH1A3-203ENST00000557963 1670 ntBASIC21.19■□□□□ 0.98
VMP1Q96GC9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.19■□□□□ 0.98
VMP1Q96GC9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VMP1Q96GC9 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.19■□□□□ 0.98
VMP1Q96GC9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.18■□□□□ 0.98
VMP1Q96GC9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
VMP1Q96GC9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VMP1Q96GC9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
VMP1Q96GC9 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VMP1Q96GC9 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.17■□□□□ 0.98
VMP1Q96GC9 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
VMP1Q96GC9 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VMP1Q96GC9 AL512631.2-201ENST00000604634 923 ntBASIC21.17■□□□□ 0.98
VMP1Q96GC9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VMP1Q96GC9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
VMP1Q96GC9 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
VMP1Q96GC9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
VMP1Q96GC9 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.16■□□□□ 0.98
VMP1Q96GC9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VMP1Q96GC9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
VMP1Q96GC9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
VMP1Q96GC9 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VMP1Q96GC9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VMP1Q96GC9 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
VMP1Q96GC9 AL136116.3-201ENST00000402907 1138 ntBASIC21.15■□□□□ 0.98
VMP1Q96GC9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VMP1Q96GC9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.15■□□□□ 0.98
VMP1Q96GC9 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.15■□□□□ 0.98
VMP1Q96GC9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.15■□□□□ 0.98
VMP1Q96GC9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.14■□□□□ 0.98
VMP1Q96GC9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VMP1Q96GC9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VMP1Q96GC9 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
VMP1Q96GC9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
VMP1Q96GC9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VMP1Q96GC9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VMP1Q96GC9 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VMP1Q96GC9 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.14■□□□□ 0.97
VMP1Q96GC9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.14■□□□□ 0.97
VMP1Q96GC9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms