Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TMEM56-RWDD3S4R434 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TMEM56-RWDD3S4R434 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
TMEM56-RWDD3S4R434 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 C11orf96-202ENST00000528572 1834 ntBASIC18.33■□□□□ 0.52
TMEM56-RWDD3S4R434 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 LONRF2P2-201ENST00000439212 571 ntBASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TMEM56-RWDD3S4R434 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.31■□□□□ 0.52
TMEM56-RWDD3S4R434 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 AL592293.1-201ENST00000502889 1188 ntBASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 MIR6765-201ENST00000614092 87 ntBASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TMEM56-RWDD3S4R434 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TMEM56-RWDD3S4R434 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.28■□□□□ 0.52
TMEM56-RWDD3S4R434 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMEM56-RWDD3S4R434 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMEM56-RWDD3S4R434 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TMEM56-RWDD3S4R434 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.27■□□□□ 0.52
TMEM56-RWDD3S4R434 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.27■□□□□ 0.52
TMEM56-RWDD3S4R434 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TMEM56-RWDD3S4R434 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
TMEM56-RWDD3S4R434 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
TMEM56-RWDD3S4R434 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TMEM56-RWDD3S4R434 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 AL353803.4-201ENST00000565882 1934 ntBASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 PVT1-219ENST00000523427 938 ntTSL 3 BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TMEM56-RWDD3S4R434 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms