Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
DDX28Q9NUL7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.3■□□□□ 0.84
DDX28Q9NUL7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 AC004987.1-201ENST00000428627 508 ntBASIC20.29■□□□□ 0.84
DDX28Q9NUL7 ATP5G2P3-201ENST00000429083 425 ntBASIC20.29■□□□□ 0.84
DDX28Q9NUL7 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 ABCB10P4-201ENST00000566803 2184 ntBASIC20.29■□□□□ 0.84
DDX28Q9NUL7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.29■□□□□ 0.84
DDX28Q9NUL7 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
DDX28Q9NUL7 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.28■□□□□ 0.84
DDX28Q9NUL7 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.27■□□□□ 0.84
DDX28Q9NUL7 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
DDX28Q9NUL7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.27■□□□□ 0.84
DDX28Q9NUL7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
DDX28Q9NUL7 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
DDX28Q9NUL7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.27■□□□□ 0.83
DDX28Q9NUL7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
DDX28Q9NUL7 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 AC007375.3-201ENST00000600936 2314 ntBASIC20.26■□□□□ 0.83
DDX28Q9NUL7 AL121603.2-201ENST00000557373 2117 ntBASIC20.26■□□□□ 0.83
DDX28Q9NUL7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 AC011551.1-201ENST00000614101 683 ntBASIC20.26■□□□□ 0.83
DDX28Q9NUL7 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
DDX28Q9NUL7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 AC139795.1-202ENST00000500444 432 ntBASIC20.25■□□□□ 0.83
DDX28Q9NUL7 AC022616.5-201ENST00000518796 181 ntBASIC20.25■□□□□ 0.83
DDX28Q9NUL7 DUX4L18-201ENST00000553347 1267 ntBASIC20.25■□□□□ 0.83
DDX28Q9NUL7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
DDX28Q9NUL7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
DDX28Q9NUL7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
DDX28Q9NUL7 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DDX28Q9NUL7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DDX28Q9NUL7 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.22■□□□□ 0.83
DDX28Q9NUL7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DDX28Q9NUL7 AC137767.1-201ENST00000602918 1920 ntBASIC20.22■□□□□ 0.83
DDX28Q9NUL7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
DDX28Q9NUL7 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
DDX28Q9NUL7 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms