Protein–RNA interactions for Protein: Q8NI28

LINC01006, Putative uncharacterized protein encoded by LINC01006, humanhuman

Predictions only

Length 216 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01006Q8NI28 MIR6084-201ENST00000622012 110 ntBASIC17.59■□□□□ 0.41
LINC01006Q8NI28 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LINC01006Q8NI28 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 FP325331.1-202ENST00000623531 1380 ntBASIC17.58■□□□□ 0.4
LINC01006Q8NI28 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 AC012414.1-201ENST00000556676 535 ntBASIC17.58■□□□□ 0.4
LINC01006Q8NI28 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 RARRES2P11-201ENST00000635158 484 ntBASIC17.58■□□□□ 0.4
LINC01006Q8NI28 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LINC01006Q8NI28 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 AL137784.2-201ENST00000607332 1000 ntBASIC17.57■□□□□ 0.4
LINC01006Q8NI28 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.57■□□□□ 0.4
LINC01006Q8NI28 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 AC090192.1-201ENST00000517740 490 ntBASIC17.56■□□□□ 0.4
LINC01006Q8NI28 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 DUX4L4-201ENST00000566884 1269 ntBASIC17.56■□□□□ 0.4
LINC01006Q8NI28 AC010525.1-201ENST00000585559 441 ntBASIC17.56■□□□□ 0.4
LINC01006Q8NI28 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LINC01006Q8NI28 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 OR2I1P-207ENST00000453522 948 ntBASIC17.55■□□□□ 0.4
LINC01006Q8NI28 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
LINC01006Q8NI28 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC17.54■□□□□ 0.4
LINC01006Q8NI28 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 CCDC92B-201ENST00000575506 885 ntBASIC17.53■□□□□ 0.4
LINC01006Q8NI28 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LINC01006Q8NI28 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC17.52■□□□□ 0.4
LINC01006Q8NI28 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms