Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC61Q9Y6R9 AC133637.1-201ENST00000624115 1537 ntBASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 IGHV3-19-201ENST00000521488 291 ntBASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC61Q9Y6R9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC31.07■■■□□ 2.56
CCDC61Q9Y6R9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 NME4-202ENST00000382940 766 ntTSL 3 BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 AL358852.1-201ENST00000623174 1268 ntBASIC31.06■■■□□ 2.56
CCDC61Q9Y6R9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC61Q9Y6R9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC61Q9Y6R9 MIR572-201ENST00000384983 95 ntBASIC31.05■■■□□ 2.56
CCDC61Q9Y6R9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC61Q9Y6R9 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 AC027612.3-201ENST00000413684 1047 ntBASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CCDC61Q9Y6R9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L2-201ENST00000561772 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L6-201ENST00000626483 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L1-201ENST00000627662 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L8-201ENST00000629013 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L3-201ENST00000630187 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L7-201ENST00000630678 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 DUX4L5-201ENST00000630834 1275 ntBASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
CCDC61Q9Y6R9 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 KRT18P5-201ENST00000436075 1291 ntBASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 FP325331.1-202ENST00000623531 1380 ntBASIC31.02■■■□□ 2.56
CCDC61Q9Y6R9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC61Q9Y6R9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC61Q9Y6R9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC31.01■■■□□ 2.56
CCDC61Q9Y6R9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 AC123595.1-201ENST00000440769 1046 ntBASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 AC022517.1-201ENST00000592429 346 ntBASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
CCDC61Q9Y6R9 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 DUX4L4-201ENST00000566884 1269 ntBASIC31■■■□□ 2.55
CCDC61Q9Y6R9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC31■■■□□ 2.55
CCDC61Q9Y6R9 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC30.99■■■□□ 2.55
CCDC61Q9Y6R9 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC61Q9Y6R9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
CCDC61Q9Y6R9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC30.99■■■□□ 2.55
CCDC61Q9Y6R9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC30.98■■■□□ 2.55
CCDC61Q9Y6R9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC61Q9Y6R9 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.98■■■□□ 2.55
CCDC61Q9Y6R9 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC61Q9Y6R9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CCDC61Q9Y6R9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC30.98■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms