Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 AL117332.1-201ENST00000622628 974 ntBASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
NKX6-3A6NJ46 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.86■□□□□ 0.61
NKX6-3A6NJ46 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.85■□□□□ 0.61
NKX6-3A6NJ46 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 AC131212.1-201ENST00000613771 668 ntBASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
NKX6-3A6NJ46 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
NKX6-3A6NJ46 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.83■□□□□ 0.61
NKX6-3A6NJ46 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
NKX6-3A6NJ46 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
NKX6-3A6NJ46 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX6-3A6NJ46 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
NKX6-3A6NJ46 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
NKX6-3A6NJ46 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 SRR-208ENST00000576848 588 ntTSL 4 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 MIR3621-201ENST00000580529 85 ntBASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 THRA-202ENST00000394121 2260 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.82■□□□□ 0.6
NKX6-3A6NJ46 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
NKX6-3A6NJ46 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.8■□□□□ 0.6
NKX6-3A6NJ46 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC18.79■□□□□ 0.6
NKX6-3A6NJ46 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms