Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MMP28Q9H239 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.88■□□□□ 0.77
MMP28Q9H239 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
MMP28Q9H239 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
MMP28Q9H239 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
MMP28Q9H239 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
MMP28Q9H239 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
MMP28Q9H239 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
MMP28Q9H239 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.87■□□□□ 0.77
MMP28Q9H239 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
MMP28Q9H239 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.86■□□□□ 0.77
MMP28Q9H239 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MMP28Q9H239 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.86■□□□□ 0.77
MMP28Q9H239 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MMP28Q9H239 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
MMP28Q9H239 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
MMP28Q9H239 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
MMP28Q9H239 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.86■□□□□ 0.77
MMP28Q9H239 MIR3960-201ENST00000583311 91 ntBASIC19.86■□□□□ 0.77
MMP28Q9H239 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
MMP28Q9H239 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
MMP28Q9H239 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
MMP28Q9H239 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
MMP28Q9H239 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
MMP28Q9H239 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.85■□□□□ 0.77
MMP28Q9H239 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.85■□□□□ 0.77
MMP28Q9H239 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MMP28Q9H239 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
MMP28Q9H239 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.85■□□□□ 0.77
MMP28Q9H239 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.85■□□□□ 0.77
MMP28Q9H239 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MMP28Q9H239 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MMP28Q9H239 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
MMP28Q9H239 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
MMP28Q9H239 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
MMP28Q9H239 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
MMP28Q9H239 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
MMP28Q9H239 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
MMP28Q9H239 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
MMP28Q9H239 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.84■□□□□ 0.77
MMP28Q9H239 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.84■□□□□ 0.77
MMP28Q9H239 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.84■□□□□ 0.77
MMP28Q9H239 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
MMP28Q9H239 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MMP28Q9H239 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.84■□□□□ 0.77
MMP28Q9H239 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.84■□□□□ 0.77
MMP28Q9H239 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
MMP28Q9H239 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.83■□□□□ 0.77
MMP28Q9H239 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
MMP28Q9H239 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
MMP28Q9H239 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MMP28Q9H239 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MMP28Q9H239 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.83■□□□□ 0.77
MMP28Q9H239 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
MMP28Q9H239 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.83■□□□□ 0.77
MMP28Q9H239 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MMP28Q9H239 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
MMP28Q9H239 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.83■□□□□ 0.76
MMP28Q9H239 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
MMP28Q9H239 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 AL121603.2-201ENST00000557373 2117 ntBASIC19.82■□□□□ 0.76
MMP28Q9H239 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
MMP28Q9H239 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.82■□□□□ 0.76
MMP28Q9H239 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC19.82■□□□□ 0.76
MMP28Q9H239 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
MMP28Q9H239 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.81■□□□□ 0.76
MMP28Q9H239 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.81■□□□□ 0.76
MMP28Q9H239 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC19.81■□□□□ 0.76
MMP28Q9H239 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.81■□□□□ 0.76
MMP28Q9H239 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
MMP28Q9H239 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
MMP28Q9H239 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
MMP28Q9H239 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
MMP28Q9H239 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
MMP28Q9H239 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms