Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VMP1Q96GC9 KRT16P3-201ENST00000439127 1283 ntBASIC21.54■■□□□ 1.04
VMP1Q96GC9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.54■■□□□ 1.04
VMP1Q96GC9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VMP1Q96GC9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VMP1Q96GC9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VMP1Q96GC9 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.53■■□□□ 1.04
VMP1Q96GC9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.53■■□□□ 1.04
VMP1Q96GC9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VMP1Q96GC9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VMP1Q96GC9 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VMP1Q96GC9 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
VMP1Q96GC9 MTDHP2-201ENST00000601468 714 ntBASIC21.52■■□□□ 1.04
VMP1Q96GC9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VMP1Q96GC9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC21.52■■□□□ 1.04
VMP1Q96GC9 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC21.52■■□□□ 1.03
VMP1Q96GC9 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
VMP1Q96GC9 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
VMP1Q96GC9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.52■■□□□ 1.03
VMP1Q96GC9 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VMP1Q96GC9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 AP003733.4-201ENST00000623785 1697 ntBASIC21.51■■□□□ 1.03
VMP1Q96GC9 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.51■■□□□ 1.03
VMP1Q96GC9 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
VMP1Q96GC9 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.51■■□□□ 1.03
VMP1Q96GC9 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.51■■□□□ 1.03
VMP1Q96GC9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.51■■□□□ 1.03
VMP1Q96GC9 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
VMP1Q96GC9 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VMP1Q96GC9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.5■■□□□ 1.03
VMP1Q96GC9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VMP1Q96GC9 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC21.5■■□□□ 1.03
VMP1Q96GC9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VMP1Q96GC9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.5■■□□□ 1.03
VMP1Q96GC9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.5■■□□□ 1.03
VMP1Q96GC9 SNX5-217ENST00000606557 1087 ntBASIC21.5■■□□□ 1.03
VMP1Q96GC9 AC010997.5-201ENST00000609182 354 ntBASIC21.5■■□□□ 1.03
VMP1Q96GC9 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VMP1Q96GC9 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VMP1Q96GC9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VMP1Q96GC9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
VMP1Q96GC9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VMP1Q96GC9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VMP1Q96GC9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
VMP1Q96GC9 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.48■■□□□ 1.03
VMP1Q96GC9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.48■■□□□ 1.03
VMP1Q96GC9 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.48■■□□□ 1.03
VMP1Q96GC9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VMP1Q96GC9 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VMP1Q96GC9 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.47■■□□□ 1.03
VMP1Q96GC9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VMP1Q96GC9 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
VMP1Q96GC9 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.46■■□□□ 1.03
VMP1Q96GC9 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.46■■□□□ 1.03
VMP1Q96GC9 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VMP1Q96GC9 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms